Atomistry » Zinc » PDB 2zep-2zxg » 2zp8
Atomistry »
  Zinc »
    PDB 2zep-2zxg »
      2zp8 »

Zinc in PDB 2zp8: The Nature of the Trap:Anti-Trap Complex

Protein crystallography data

The structure of The Nature of the Trap:Anti-Trap Complex, PDB code: 2zp8 was solved by M.Watanabe, J.G.Heddle, S.Unzai, S.Akashi, S.Y.Park, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.20
Space group H 3 2 1
Cell size a, b, c (Å), α, β, γ (°) 201.134, 201.134, 133.168, 90.00, 90.00, 120.00
R / Rfree (%) 22.9 / 26.8

Zinc Binding Sites:

The binding sites of Zinc atom in the The Nature of the Trap:Anti-Trap Complex (pdb code 2zp8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the The Nature of the Trap:Anti-Trap Complex, PDB code: 2zp8:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 2zp8

Go back to Zinc Binding Sites List in 2zp8
Zinc binding site 1 out of 6 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn54

b:0.3
occ:1.00
SG E:CYS12 1.6 63.8 1.0
SG E:CYS26 2.9 64.3 1.0
CB E:CYS12 3.0 64.0 1.0
SG E:CYS15 3.0 64.4 1.0
CB E:LYS14 3.1 64.2 1.0
N E:CYS15 3.4 64.1 1.0
CB E:ALA28 3.5 64.3 1.0
N E:CYS29 3.5 64.1 1.0
CB E:CYS29 3.7 64.0 1.0
SG E:CYS29 3.8 63.3 1.0
N E:LYS14 3.8 64.1 1.0
CA E:LYS14 3.8 64.2 1.0
CB E:CYS15 4.0 64.0 1.0
C E:LYS14 4.0 64.2 1.0
CA E:CYS12 4.1 63.9 1.0
CG E:LYS14 4.1 64.4 1.0
CA E:CYS29 4.2 64.0 1.0
C E:CYS12 4.2 64.0 1.0
CA E:CYS15 4.3 64.0 1.0
C E:ALA28 4.3 64.1 1.0
CA E:ALA28 4.3 64.2 1.0
CD E:LYS14 4.4 64.3 1.0
O E:CYS12 4.4 64.1 1.0
CB E:CYS26 4.4 64.3 1.0
N E:ALA28 4.6 64.2 1.0
N E:PRO13 4.7 64.1 1.0
C E:PRO13 5.0 64.1 1.0

Zinc binding site 2 out of 6 in 2zp8

Go back to Zinc Binding Sites List in 2zp8
Zinc binding site 2 out of 6 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn54

b:78.2
occ:1.00
SG F:CYS15 2.1 62.7 1.0
SG F:CYS29 2.3 62.0 1.0
SG F:CYS26 2.3 64.4 1.0
SG F:CYS12 2.9 63.7 1.0
CB F:CYS29 2.9 63.6 1.0
CB F:CYS15 3.0 63.8 1.0
CB F:CYS26 3.1 64.3 1.0
CB F:CYS12 3.4 63.8 1.0
N F:CYS29 3.9 64.0 1.0
CA F:GLY33 4.0 64.2 1.0
CA F:CYS29 4.0 63.9 1.0
N F:CYS15 4.0 64.0 1.0
CA F:CYS15 4.1 63.9 1.0
N F:GLY33 4.2 64.3 1.0
CA F:GLY19 4.3 64.3 0.0
N F:GLY19 4.4 64.1 1.0
C F:GLY33 4.5 64.1 1.0
CA F:CYS26 4.6 64.3 1.0
O F:GLY33 4.7 64.0 1.0
CA F:CYS12 4.8 63.9 1.0
C F:CYS29 4.9 64.0 1.0
C F:GLY19 4.9 64.3 1.0
C F:CYS15 5.0 64.0 1.0

Zinc binding site 3 out of 6 in 2zp8

Go back to Zinc Binding Sites List in 2zp8
Zinc binding site 3 out of 6 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn54

b:71.9
occ:1.00
SG G:CYS29 2.4 63.2 1.0
SG G:CYS15 2.4 62.6 1.0
SG G:CYS26 2.4 63.2 1.0
SG G:CYS12 2.5 63.3 1.0
CB G:CYS29 3.0 63.8 1.0
CB G:CYS26 3.1 64.1 1.0
CB G:CYS15 3.4 63.6 1.0
CB G:CYS12 3.4 63.7 1.0
N G:CYS29 3.5 64.0 1.0
N G:CYS15 3.8 64.0 1.0
CA G:CYS29 3.8 64.0 1.0
CA G:CYS15 4.2 63.9 1.0
CB G:ALA28 4.5 64.0 1.0
CB G:LYS14 4.5 64.2 1.0
CA G:CYS26 4.5 64.2 1.0
C G:ALA28 4.6 64.1 1.0
CA G:GLY33 4.7 64.2 1.0
C G:CYS29 4.8 64.0 1.0
N G:GLY33 4.8 64.2 1.0
C G:LYS14 4.8 64.1 1.0
C G:CYS26 4.8 64.3 1.0
CA G:CYS12 4.8 63.8 1.0
N G:ALA28 4.8 64.2 1.0
CA G:ALA28 4.9 64.1 1.0
N G:SER30 4.9 64.0 1.0
CA G:GLY19 4.9 64.3 1.0

Zinc binding site 4 out of 6 in 2zp8

Go back to Zinc Binding Sites List in 2zp8
Zinc binding site 4 out of 6 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn54

b:0.8
occ:1.00
SG H:CYS12 1.6 64.0 1.0
SG H:CYS26 2.8 64.4 1.0
CB H:CYS12 2.9 64.1 1.0
N H:CYS29 3.2 64.1 1.0
CB H:CYS29 3.2 64.0 1.0
SG H:CYS15 3.2 64.2 1.0
SG H:CYS29 3.2 63.4 1.0
CB H:ALA28 3.6 64.2 1.0
CB H:LYS14 3.7 64.2 1.0
N H:CYS15 3.7 64.1 1.0
CA H:CYS29 3.8 64.0 1.0
CB H:CYS15 4.0 64.0 1.0
C H:ALA28 4.1 64.1 1.0
CB H:CYS26 4.1 64.3 1.0
CA H:ALA28 4.2 64.2 1.0
CA H:CYS12 4.2 63.9 1.0
N H:LYS14 4.3 64.1 1.0
CA H:LYS14 4.3 64.2 1.0
C H:LYS14 4.4 64.2 1.0
CA H:CYS15 4.5 64.0 1.0
C H:CYS12 4.5 64.0 1.0
N H:ALA28 4.5 64.2 1.0
O H:CYS12 4.6 64.1 1.0
CG H:LYS14 4.7 64.3 1.0
CD H:LYS14 4.9 64.4 1.0

Zinc binding site 5 out of 6 in 2zp8

Go back to Zinc Binding Sites List in 2zp8
Zinc binding site 5 out of 6 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn54

b:0.6
occ:1.00
SG I:CYS15 1.5 63.8 1.0
SG I:CYS29 2.7 64.2 1.0
CB I:CYS15 2.7 64.0 1.0
SG I:CYS26 2.7 64.3 1.0
SG I:CYS12 2.9 63.8 1.0
CB I:CYS12 3.1 63.8 1.0
CB I:CYS29 3.3 64.0 1.0
CB I:CYS26 3.5 64.3 1.0
N I:CYS15 3.6 64.1 1.0
CA I:CYS15 3.7 64.0 1.0
CA I:GLY33 4.0 64.2 1.0
N I:CYS29 4.3 64.0 1.0
N I:GLY19 4.3 64.2 1.0
N I:GLY33 4.3 64.2 1.0
CA I:CYS29 4.4 64.0 1.0
CA I:GLY19 4.4 64.3 0.0
C I:GLY33 4.4 64.1 1.0
O I:GLY33 4.5 64.0 1.0
C I:CYS15 4.5 64.0 1.0
CA I:CYS12 4.5 63.9 1.0
O I:CYS12 4.6 64.1 1.0
C I:LYS14 4.7 64.2 1.0
C I:CYS12 4.8 64.0 1.0
CB I:LYS14 5.0 64.2 1.0

Zinc binding site 6 out of 6 in 2zp8

Go back to Zinc Binding Sites List in 2zp8
Zinc binding site 6 out of 6 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn54

b:71.1
occ:1.00
SG J:CYS29 2.3 63.0 1.0
SG J:CYS12 2.3 63.5 1.0
SG J:CYS26 2.3 63.7 1.0
SG J:CYS15 2.5 62.6 1.0
CB J:CYS15 3.1 63.5 1.0
CB J:CYS29 3.2 63.8 1.0
CB J:CYS12 3.3 63.7 1.0
CB J:CYS26 3.3 64.1 1.0
N J:CYS15 3.6 64.0 1.0
N J:CYS29 3.7 64.0 1.0
CA J:CYS15 3.9 63.8 1.0
CA J:CYS29 4.0 64.0 1.0
CB J:LYS14 4.3 64.0 1.0
CB J:ALA28 4.5 63.9 1.0
C J:LYS14 4.6 64.1 1.0
CA J:CYS12 4.7 63.9 1.0
CA J:CYS26 4.7 64.2 1.0
CA J:GLY33 4.7 64.2 1.0
C J:ALA28 4.8 64.1 1.0
CA J:LYS14 4.8 64.1 1.0
O J:CYS12 4.9 64.0 1.0
N J:GLY33 4.9 64.1 1.0
C J:CYS15 4.9 63.9 1.0
C J:CYS12 5.0 64.0 1.0
N J:LYS14 5.0 64.1 1.0
CA J:GLY19 5.0 64.3 1.0
CA J:ALA28 5.0 64.1 1.0
N J:ALA28 5.0 64.2 1.0

Reference:

M.Watanabe, J.G.Heddle, K.Kikuchi, S.Unzai, S.Akashi, S.Y.Park, J.R.Tame. The Nature of the Trap-Anti-Trap Complex. Proc.Natl.Acad.Sci.Usa V. 106 2176 2009.
ISSN: ISSN 0027-8424
PubMed: 19164760
DOI: 10.1073/PNAS.0801032106
Page generated: Thu Oct 24 10:52:07 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy