Atomistry » Zinc » PDB 2zep-2zxg » 2zkw
Atomistry »
  Zinc »
    PDB 2zep-2zxg »
      2zkw »

Zinc in PDB 2zkw: Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21

Enzymatic activity of Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21

All present enzymatic activity of Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21:
1.15.1.1;

Protein crystallography data

The structure of Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21, PDB code: 2zkw was solved by S.Yoshikawa, M.Kukimoto-Niino, K.Ito, L.Chen, Z.Q.Fu, J.Chrzas, B.C.Wang, M.Shirouzu, M.Urushitani, R.Takahashi, S.Yokoyama, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.46 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.616, 46.233, 52.818, 90.00, 94.42, 90.00
R / Rfree (%) 19.3 / 25.2

Other elements in 2zkw:

The structure of Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21 also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21 (pdb code 2zkw). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21, PDB code: 2zkw:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2zkw

Go back to Zinc Binding Sites List in 2zkw
Zinc binding site 1 out of 2 in the Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:27.6
occ:1.00
ND1 A:HIS80 1.9 26.4 1.0
ND1 A:HIS71 2.0 26.2 1.0
OD1 A:ASP83 2.0 25.7 1.0
ND1 A:HIS63 2.1 24.1 1.0
CG A:ASP83 2.7 21.5 1.0
OD2 A:ASP83 2.7 25.7 1.0
CE1 A:HIS80 2.8 26.9 1.0
CE1 A:HIS71 2.8 32.7 1.0
CG A:HIS80 3.0 29.4 1.0
CG A:HIS71 3.1 26.1 1.0
CG A:HIS63 3.1 27.7 1.0
CE1 A:HIS63 3.1 30.1 1.0
CB A:HIS63 3.4 28.7 1.0
CB A:HIS80 3.4 25.0 1.0
CB A:HIS71 3.5 24.7 1.0
CA A:HIS71 3.9 25.2 1.0
NE2 A:HIS80 3.9 27.8 1.0
NE2 A:HIS71 4.0 25.0 1.0
CD2 A:HIS80 4.0 22.5 1.0
CD2 A:HIS71 4.1 34.8 1.0
CB A:ASP83 4.1 28.0 1.0
O A:LYS136 4.2 42.2 1.0
NE2 A:HIS63 4.2 23.5 1.0
CD2 A:HIS63 4.2 29.0 1.0
N A:HIS80 4.6 25.1 1.0
CA A:HIS80 4.7 23.4 1.0
N A:GLY72 4.7 29.1 1.0
CA A:ASP83 4.7 20.1 1.0
C A:HIS71 4.8 31.4 1.0
CD2 A:HIS46 4.8 21.7 1.0
O A:HOH418 4.9 35.7 1.0
CA A:HIS63 4.9 29.9 1.0
N A:HIS71 4.9 27.2 1.0
N A:ASP83 5.0 23.6 1.0

Zinc binding site 2 out of 2 in 2zkw

Go back to Zinc Binding Sites List in 2zkw
Zinc binding site 2 out of 2 in the Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:24.4
occ:1.00
ND1 B:HIS63 2.0 26.4 1.0
ND1 B:HIS71 2.0 19.3 1.0
OD1 B:ASP83 2.1 20.7 1.0
ND1 B:HIS80 2.2 18.2 1.0
CG B:ASP83 2.8 24.6 1.0
OD2 B:ASP83 2.9 22.2 1.0
CE1 B:HIS71 2.9 23.3 1.0
CE1 B:HIS63 2.9 26.4 1.0
CG B:HIS63 3.0 20.8 1.0
CE1 B:HIS80 3.1 22.5 1.0
CG B:HIS71 3.1 23.1 1.0
CG B:HIS80 3.2 20.9 1.0
CB B:HIS63 3.4 17.9 1.0
CB B:HIS80 3.6 24.1 1.0
CB B:HIS71 3.6 19.0 1.0
CA B:HIS71 3.9 23.4 1.0
NE2 B:HIS71 4.0 26.2 1.0
NE2 B:HIS63 4.0 24.1 1.0
O B:LYS136 4.1 28.3 1.0
CD2 B:HIS63 4.1 26.5 1.0
CD2 B:HIS71 4.2 29.9 1.0
CB B:ASP83 4.2 28.5 1.0
NE2 B:HIS80 4.2 22.9 1.0
CD2 B:HIS80 4.3 18.7 1.0
N B:HIS80 4.6 20.6 1.0
N B:GLY72 4.7 24.5 1.0
CA B:HIS80 4.7 19.1 1.0
CA B:ASP83 4.8 21.6 1.0
C B:HIS71 4.8 28.1 1.0
N B:HIS71 4.9 24.7 1.0
CD2 B:HIS46 4.9 27.9 1.0
N B:ASP83 4.9 20.6 1.0
CA B:HIS63 4.9 25.3 1.0

Reference:

S.Yoshikawa, M.Kukimoto-Niino, K.Ito, L.Chen, Z.Q.Fu, J.Chrzas, B.C.Wang, M.Shirouzu, M.Urushitani, R.Takahashi, S.Yokoyama. Crystal Structure of Human Cu-Zn Superoxide Dismutase Mutant G85R in Space Group P21 To Be Published.
Page generated: Thu Oct 24 10:48:26 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy