Zinc in PDB 2z2s: Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr

The structure of Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr, PDB code: 2z2s was solved by S.A.Darst, E.A.Campbell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	119.135, 46.452, 141.701, 90.00, 91.63, 90.00
R / Rfree (%)	25 / 28.6

The binding sites of Zinc atom in the Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr (pdb code 2z2s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr, PDB code: 2z2s:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn204 b:49.8 occ:1.00 NE2 B:HIS31 2.0 28.9 1.0 ND1 B:HIS6 2.0 26.6 1.0 SG B:CYS35 2.0 12.5 1.0 SG B:CYS38 2.2 11.5 1.0 CE1 B:HIS31 2.9 28.5 1.0 CE1 B:HIS6 2.9 24.9 1.0 CD2 B:HIS31 3.0 28.6 1.0 CG B:HIS6 3.0 27.4 1.0 CB B:CYS35 3.0 15.6 1.0 CB B:CYS38 3.3 16.0 1.0 CB B:HIS6 3.4 28.7 1.0 O B:HOH231 3.5 40.0 1.0 CA B:HIS6 3.8 31.1 1.0 N B:CYS38 3.9 17.8 1.0 ND1 B:HIS31 4.0 29.3 1.0 CG B:HIS31 4.0 28.1 1.0 NE2 B:HIS6 4.1 26.9 1.0 CD2 B:HIS6 4.1 26.4 1.0 CG2 B:ILE3 4.2 46.2 1.0 CA B:CYS38 4.2 18.2 1.0 CA B:CYS35 4.5 18.8 1.0 O B:HIS5 4.5 34.9 1.0 O B:CYS35 4.6 19.9 1.0 N B:VAL7 4.6 30.1 1.0 N B:HIS6 4.7 32.7 1.0 CB B:GLU37 4.7 21.6 1.0 O B:HOH221 4.8 40.5 1.0 C B:HIS6 4.8 31.2 1.0 C B:CYS35 4.8 19.2 1.0 C B:HIS5 4.9 35.5 1.0 C B:GLU37 5.0 17.3 1.0 CG B:GLU37 5.0 26.4 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn204 b:53.8 occ:1.00 SG D:CYS38 1.9 23.5 1.0 NE2 D:HIS31 2.0 27.9 1.0 ND1 D:HIS6 2.0 40.7 1.0 SG D:CYS35 2.5 26.2 1.0 CG D:HIS6 2.9 40.0 1.0 CD2 D:HIS31 2.9 26.7 1.0 CE1 D:HIS31 3.0 27.2 1.0 CE1 D:HIS6 3.1 39.5 1.0 CB D:HIS6 3.1 40.4 1.0 CB D:CYS38 3.3 23.9 1.0 CB D:CYS35 3.4 26.7 1.0 CA D:HIS6 3.5 41.1 1.0 N D:CYS38 4.0 26.6 1.0 CD2 D:HIS6 4.1 40.8 1.0 ND1 D:HIS31 4.1 26.0 1.0 CG D:HIS31 4.1 26.1 1.0 NE2 D:HIS6 4.1 40.0 1.0 CA D:CYS38 4.2 24.8 1.0 N D:VAL7 4.3 38.8 1.0 CG2 D:ILE3 4.3 47.7 1.0 O D:HIS5 4.4 42.6 1.0 N D:HIS6 4.4 42.6 1.0 C D:HIS6 4.5 40.0 1.0 C D:HIS5 4.7 43.9 1.0 O D:CYS35 4.8 30.4 1.0 CB D:GLU37 4.8 29.7 1.0 CA D:CYS35 4.8 28.6 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn204 b:70.7 occ:1.00 NE2 F:HIS31 1.9 45.2 1.0 ND1 F:HIS6 2.0 44.5 1.0 SG F:CYS35 2.0 26.3 1.0 CE1 F:HIS31 2.6 44.3 1.0 SG F:CYS38 2.7 36.3 1.0 CB F:CYS35 2.9 29.8 1.0 CE1 F:HIS6 2.9 44.5 1.0 CD2 F:HIS31 3.0 43.5 1.0 CG F:HIS6 3.0 43.8 1.0 CB F:HIS6 3.4 43.8 1.0 CB F:CYS38 3.7 34.9 1.0 ND1 F:HIS31 3.8 44.4 1.0 CA F:HIS6 3.8 44.4 1.0 CG2 F:ILE3 3.9 45.9 1.0 CG F:HIS31 4.0 41.9 1.0 NE2 F:HIS6 4.1 44.1 1.0 CD2 F:HIS6 4.1 42.1 1.0 N F:CYS38 4.2 34.4 1.0 O F:HIS5 4.2 44.8 1.0 CA F:CYS35 4.3 32.2 1.0 O F:CYS35 4.3 33.4 1.0 CA F:CYS38 4.6 33.9 1.0 N F:HIS6 4.6 45.1 1.0 CB F:GLU37 4.6 37.7 1.0 C F:HIS5 4.7 45.7 1.0 C F:CYS35 4.7 33.4 1.0 N F:VAL7 4.7 42.0 1.0 CB F:ILE3 4.8 45.9 1.0 C F:HIS6 4.9 43.7 1.0 CD1 F:ILE3 5.0 42.8 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Rhodobacter Sphaeroides Sige in Complex with the Anti-Sigma Chrr within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn204 b:61.6 occ:1.00 NE2 H:HIS31 1.9 37.5 1.0 SG H:CYS35 2.0 23.0 1.0 ND1 H:HIS6 2.1 33.8 1.0 SG H:CYS38 2.7 26.8 1.0 CE1 H:HIS31 2.7 37.4 1.0 CD2 H:HIS31 3.1 35.5 1.0 CG H:HIS6 3.1 32.5 1.0 CE1 H:HIS6 3.1 33.3 1.0 CB H:CYS35 3.3 25.1 1.0 CB H:HIS6 3.4 36.1 1.0 CB H:CYS38 3.5 28.4 1.0 CA H:HIS6 3.6 38.3 1.0 ND1 H:HIS31 3.9 37.3 1.0 CG2 H:ILE3 3.9 41.2 1.0 CG H:HIS31 4.1 34.0 1.0 O H:HIS5 4.1 39.6 1.0 NE2 H:HIS6 4.2 33.2 1.0 CD2 H:HIS6 4.2 32.0 1.0 N H:CYS38 4.2 30.1 1.0 O H:HOH207 4.4 64.8 1.0 N H:HIS6 4.5 39.9 1.0 N H:VAL7 4.5 37.5 1.0 CA H:CYS38 4.5 28.1 1.0 C H:HIS5 4.6 40.5 1.0 O H:CYS35 4.6 29.6 1.0 CA H:CYS35 4.6 26.4 1.0 C H:HIS6 4.6 38.4 1.0 CB H:GLU37 4.9 36.4 1.0 C H:CYS35 4.9 28.0 1.0

E.A.Campbell, R.Greenwell, J.R.Anthony, S.Wang, L.Lim, K.Das, H.J.Sofia, T.J.Donohue, S.A.Darst. A Conserved Structural Module Regulates Transcriptional Responses to Diverse Stress Signals in Bacteria. Mol.Cell V. 27 793 2007.
ISSN: ISSN 1097-2765
PubMed: 17803943
DOI: 10.1016/J.MOLCEL.2007.07.009