Zinc in PDB 2yrt: Solution Structure of the Chord Domain of Human Chord- Containing Protein 1

The binding sites of Zinc atom in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1 (pdb code 2yrt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1, PDB code: 2yrt:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Chord Domain of Human Chord- Containing Protein 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS71 2.0 0.0 1.0 SG A:CYS31 2.3 0.0 1.0 SG A:CYS17 2.4 0.0 1.0 SG A:CYS12 2.4 0.0 1.0 CE1 A:HIS71 2.8 0.0 1.0 CG A:HIS71 3.0 0.0 1.0 HA A:HIS71 3.0 0.0 1.0 HE1 A:HIS71 3.0 0.0 1.0 HB2 A:CYS12 3.1 0.0 1.0 HB3 A:CYS17 3.1 0.0 1.0 CB A:CYS12 3.2 0.0 1.0 CB A:CYS17 3.2 0.0 1.0 HD21 A:ASN14 3.3 0.0 1.0 HB3 A:HIS71 3.3 0.0 1.0 HB2 A:CYS31 3.3 0.0 1.0 CB A:CYS31 3.4 0.0 1.0 HB2 A:CYS17 3.4 0.0 1.0 HB3 A:CYS12 3.5 0.0 1.0 CB A:HIS71 3.5 0.0 1.0 HA A:CYS31 3.6 0.0 1.0 CA A:HIS71 3.7 0.0 1.0 NE2 A:HIS71 3.8 0.0 1.0 CD2 A:HIS71 3.9 0.0 1.0 H A:THR32 4.0 0.0 1.0 HB2 A:ASN14 4.0 0.0 1.0 CA A:CYS31 4.0 0.0 1.0 ND2 A:ASN14 4.2 0.0 1.0 H A:ASN72 4.2 0.0 1.0 HB3 A:CYS31 4.3 0.0 1.0 HB3 A:TYR33 4.4 0.0 1.0 H A:GLN19 4.4 0.0 1.0 N A:HIS71 4.5 0.0 1.0 N A:THR32 4.5 0.0 1.0 HB2 A:HIS71 4.5 0.0 1.0 H A:HIS71 4.6 0.0 1.0 HB3 A:PHE21 4.6 0.0 1.0 HD1 A:TYR33 4.6 0.0 1.0 C A:CYS31 4.6 0.0 1.0 HD22 A:ASN14 4.6 0.0 1.0 HD1 A:PHE21 4.7 0.0 1.0 HE2 A:HIS71 4.7 0.0 1.0 CA A:CYS12 4.7 0.0 1.0 CA A:CYS17 4.7 0.0 1.0 O A:GLN19 4.7 0.0 1.0 HB2 A:GLN19 4.7 0.0 1.0 HA A:CYS12 4.9 0.0 1.0 H A:ASN14 4.9 0.0 1.0 C A:HIS71 4.9 0.0 1.0 H A:GLY18 4.9 0.0 1.0 HD2 A:HIS71 4.9 0.0 1.0 N A:ASN72 4.9 0.0 1.0 CB A:ASN14 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Chord Domain of Human Chord- Containing Protein 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Chord Domain of Human Chord- Containing Protein 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 ND1 A:HIS34 1.9 0.0 1.0 SG A:CYS49 2.2 0.0 1.0 SG A:CYS50 2.3 0.0 1.0 SG A:CYS66 2.4 0.0 1.0 CE1 A:HIS34 2.6 0.0 1.0 HE1 A:HIS34 2.8 0.0 1.0 HB3 A:CYS66 2.9 0.0 1.0 H A:CYS66 3.1 0.0 1.0 CG A:HIS34 3.1 0.0 1.0 HB3 A:CYS50 3.2 0.0 1.0 H A:CYS50 3.2 0.0 1.0 CB A:CYS66 3.3 0.0 1.0 CB A:CYS50 3.3 0.0 1.0 HB3 A:HIS34 3.3 0.0 1.0 HB2 A:TRP47 3.3 0.0 1.0 HB2 A:CYS49 3.4 0.0 1.0 CB A:CYS49 3.5 0.0 1.0 HA A:HIS34 3.5 0.0 1.0 N A:CYS50 3.6 0.0 1.0 CB A:HIS34 3.7 0.0 1.0 N A:CYS66 3.8 0.0 1.0 NE2 A:HIS34 3.8 0.0 1.0 HD2 A:PRO35 3.9 0.0 1.0 CD2 A:HIS34 4.1 0.0 1.0 CA A:CYS50 4.1 0.0 1.0 HB2 A:CYS66 4.1 0.0 1.0 C A:CYS49 4.1 0.0 1.0 CA A:CYS66 4.1 0.0 1.0 CA A:HIS34 4.2 0.0 1.0 HA2 A:GLY65 4.2 0.0 1.0 CB A:TRP47 4.2 0.0 1.0 HB2 A:CYS50 4.2 0.0 1.0 HB3 A:TRP47 4.2 0.0 1.0 HB3 A:CYS49 4.3 0.0 1.0 CA A:CYS49 4.3 0.0 1.0 H A:CYS49 4.4 0.0 1.0 HG21 A:ILE63 4.6 0.0 1.0 CG A:TRP47 4.6 0.0 1.0 HE2 A:HIS34 4.6 0.0 1.0 HB2 A:HIS34 4.7 0.0 1.0 HA A:CYS50 4.7 0.0 1.0 C A:GLY65 4.8 0.0 1.0 HG1 A:THR67 4.8 0.0 1.0 H A:THR67 4.8 0.0 1.0 N A:CYS49 4.8 0.0 1.0 HD1 A:TRP47 4.9 0.0 1.0 O A:TYR33 4.9 0.0 1.0 HA A:CYS66 4.9 0.0 1.0 CD1 A:TRP47 4.9 0.0 1.0 O A:CYS49 4.9 0.0 1.0 H A:GLY36 5.0 0.0 1.0 CD A:PRO35 5.0 0.0 1.0

N.Nameki, K.Saito, S.Koshiba, T.Kigawa, S.Yokoyama. Solution Structure of the Chord Domain of Human Chord-Containing Protein 1 To Be Published.