Zinc in PDB 2yrg: Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5

The binding sites of Zinc atom in the Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5 (pdb code 2yrg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5, PDB code: 2yrg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS20 2.0 0.0 1.0 SG A:CYS36 2.3 0.0 1.0 SG A:CYS17 2.3 0.0 1.0 SG A:CYS39 2.3 0.0 1.0 CE1 A:HIS20 2.8 0.0 1.0 HE1 A:HIS20 3.0 0.0 1.0 HB2 A:HIS20 3.1 0.0 1.0 CG A:HIS20 3.1 0.0 1.0 HB3 A:ARG19 3.2 0.0 1.0 CB A:CYS17 3.4 0.0 1.0 H A:HIS20 3.4 0.0 1.0 HB3 A:CYS17 3.4 0.0 1.0 H A:CYS39 3.4 0.0 1.0 HB2 A:CYS17 3.5 0.0 1.0 HB2 A:CYS39 3.5 0.0 1.0 CB A:CYS39 3.5 0.0 1.0 CB A:HIS20 3.6 0.0 1.0 H A:CYS36 3.6 0.0 1.0 HB2 A:LEU38 3.8 0.0 1.0 CB A:CYS36 3.9 0.0 1.0 HB3 A:CYS36 4.0 0.0 1.0 HG2 A:ARG19 4.0 0.0 1.0 NE2 A:HIS20 4.0 0.0 1.0 N A:CYS39 4.0 0.0 1.0 N A:HIS20 4.0 0.0 1.0 HD3 A:ARG19 4.1 0.0 1.0 CD2 A:HIS20 4.1 0.0 1.0 CA A:CYS39 4.2 0.0 1.0 CB A:ARG19 4.2 0.0 1.0 HA A:CYS39 4.2 0.0 1.0 HD22 A:LEU24 4.3 0.0 1.0 HB3 A:CYS39 4.4 0.0 1.0 N A:CYS36 4.4 0.0 1.0 CA A:HIS20 4.5 0.0 1.0 H A:ARG19 4.5 0.0 1.0 HB3 A:HIS20 4.5 0.0 1.0 CG A:ARG19 4.5 0.0 1.0 H A:GLY21 4.6 0.0 1.0 HB2 A:CYS36 4.6 0.0 1.0 CA A:CYS36 4.7 0.0 1.0 HB2 A:GLU22 4.7 0.0 1.0 H A:GLU22 4.8 0.0 1.0 CA A:CYS17 4.8 0.0 1.0 CB A:LEU38 4.8 0.0 1.0 C A:ARG19 4.8 0.0 1.0 HE2 A:HIS20 4.8 0.0 1.0 CD A:ARG19 4.9 0.0 1.0 HB2 A:ARG19 4.9 0.0 1.0 CA A:ARG19 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 ND1 A:HIS48 2.1 0.0 1.0 OD2 A:ASP31 2.1 0.0 1.0 ND1 A:HIS45 2.1 0.0 1.0 SG A:CYS28 2.2 0.0 1.0 CE1 A:HIS45 2.9 0.0 1.0 CE1 A:HIS48 3.0 0.0 1.0 HB3 A:HIS48 3.1 0.0 1.0 CG A:HIS48 3.1 0.0 1.0 HE1 A:HIS45 3.1 0.0 1.0 CG A:ASP31 3.2 0.0 1.0 CG A:HIS45 3.2 0.0 1.0 HB2 A:ASP31 3.2 0.0 1.0 HE1 A:HIS48 3.2 0.0 1.0 HA A:HIS45 3.2 0.0 1.0 HB3 A:HIS45 3.3 0.0 1.0 HB3 A:GLU30 3.3 0.0 1.0 CB A:HIS48 3.4 0.0 1.0 HB2 A:HIS48 3.5 0.0 1.0 CB A:CYS28 3.5 0.0 1.0 H A:ASP31 3.6 0.0 1.0 CB A:HIS45 3.6 0.0 1.0 HB2 A:CYS28 3.7 0.0 1.0 HB3 A:CYS28 3.7 0.0 1.0 CB A:ASP31 3.7 0.0 1.0 CA A:HIS45 3.9 0.0 1.0 N A:ASP31 4.1 0.0 1.0 NE2 A:HIS45 4.1 0.0 1.0 NE2 A:HIS48 4.1 0.0 1.0 CD2 A:HIS48 4.2 0.0 1.0 OD1 A:ASP31 4.2 0.0 1.0 HD11 A:ILE35 4.2 0.0 1.0 CD2 A:HIS45 4.2 0.0 1.0 CB A:GLU30 4.3 0.0 1.0 HG23 A:ILE35 4.4 0.0 1.0 HB2 A:GLU30 4.4 0.0 1.0 CA A:ASP31 4.6 0.0 1.0 HB3 A:ASP31 4.6 0.0 1.0 HB2 A:HIS45 4.6 0.0 1.0 O A:GLU44 4.7 0.0 1.0 H A:GLU30 4.8 0.0 1.0 C A:GLU30 4.8 0.0 1.0 O A:HIS45 4.9 0.0 1.0 C A:HIS45 4.9 0.0 1.0 CA A:CYS28 4.9 0.0 1.0 CA A:HIS48 4.9 0.0 1.0 OE1 A:GLU30 5.0 0.0 1.0 N A:HIS45 5.0 0.0 1.0 HE2 A:HIS45 5.0 0.0 1.0 CA A:GLU30 5.0 0.0 1.0

X.R.Qin, F.Hayashi, S.Yokoyama. Solution Structure of the B-Box Domain From Tripartite Motif-Containing Protein 5 To Be Published.