Zinc in PDB 2y5q: Listeria Monocytogenes Inlb (Internalin B) Residues 36-392

The structure of Listeria Monocytogenes Inlb (Internalin B) Residues 36-392, PDB code: 2y5q was solved by M.Ebbes, H.H.Niemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.97 / 3.20
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	126.400, 126.400, 107.860, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 22.5

The binding sites of Zinc atom in the Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 (pdb code 2y5q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Listeria Monocytogenes Inlb (Internalin B) Residues 36-392, PDB code: 2y5q:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Listeria Monocytogenes Inlb (Internalin B) Residues 36-392


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1322 b:84.8 occ:1.00 NE2 A:HIS162 2.3 64.1 1.0 CD2 A:HIS162 3.0 66.5 1.0 CE1 A:HIS162 3.5 70.9 1.0 CG A:HIS162 4.3 67.8 1.0 CD A:LYS139 4.3 86.8 1.0 ND1 A:HIS162 4.5 71.1 1.0 CB A:LYS139 4.8 80.3 1.0 CB A:SER136 4.8 81.7 1.0 CA A:SER136 4.9 79.2 1.0

Zinc binding site 2 out of 3 in the Listeria Monocytogenes Inlb (Internalin B) Residues 36-392


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1323 b:89.8 occ:1.00 NE2 A:HIS312 2.2 94.3 1.0 OE1 A:GLU270 2.4 81.2 1.0 CE1 A:HIS312 2.6 93.9 1.0 CD A:GLU270 3.0 84.6 1.0 OE2 A:GLU270 3.1 84.4 1.0 CD2 A:HIS312 3.5 91.6 1.0 ND1 A:HIS312 3.9 90.5 1.0 CG2 A:ILE297 4.1 85.0 1.0 CG A:HIS312 4.3 85.6 1.0 CG A:GLU270 4.4 85.9 1.0

Zinc binding site 3 out of 3 in the Listeria Monocytogenes Inlb (Internalin B) Residues 36-392


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Listeria Monocytogenes Inlb (Internalin B) Residues 36-392 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1324 b:94.1 occ:1.00 CB A:ASP275 2.7 0.8 1.0 NE2 A:HIS286 2.9 0.7 1.0 CE1 A:HIS286 2.9 0.7 1.0 CG A:ASP275 3.4 0.1 1.0 OD2 A:ASP275 3.5 0.1 1.0 CA A:ASP275 4.0 0.7 1.0 CD2 A:HIS286 4.2 0.8 1.0 ND1 A:HIS286 4.3 0.7 1.0 N A:ASP275 4.4 0.0 1.0 OD1 A:ASP275 4.4 0.2 1.0 O A:ASP275 4.5 0.2 1.0 C A:ASP275 4.7 1.0 1.0 CG A:HIS286 4.9 0.8 1.0

M.Ebbes, W.M.Bleymuller, M.Cernescu, R.Nolker, B.Brutschy, H.H.Niemann. Fold and Function of the Inlb B-Repeat. J.Biol.Chem. V. 286 15496 2011.
ISSN: ISSN 0021-9258
PubMed: 21345802
DOI: 10.1074/JBC.M110.189951