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Zinc in PDB 2qw5: Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution, PDB code: 2qw5 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.11 / 1.78
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.238, 84.238, 208.172, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 22.4

Other elements in 2qw5:

The structure of Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution (pdb code 2qw5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution, PDB code: 2qw5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2qw5

Go back to Zinc Binding Sites List in 2qw5
Zinc binding site 1 out of 2 in the Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:24.7
occ:0.50
O A:HOH406 2.0 27.6 1.0
OE1 A:GLU280 2.1 30.8 1.0
OE2 A:GLU182 2.1 17.8 1.0
OD2 A:ASP215 2.3 22.9 1.0
OE1 A:GLN246 2.4 22.6 1.0
CD A:GLU280 3.0 33.0 1.0
CD A:GLU182 3.2 24.1 1.0
OE2 A:GLU280 3.3 36.7 1.0
CD A:GLN246 3.4 26.0 1.0
CG A:ASP215 3.4 18.7 1.0
NH2 A:ARG252 3.7 25.1 1.0
OE1 A:GLU182 3.7 26.1 1.0
NE2 A:GLN246 3.7 28.0 1.0
CB A:ASP215 3.8 15.2 1.0
NE2 A:HIS218 4.0 14.8 1.0
CD2 A:HIS218 4.2 13.6 1.0
CG A:GLU280 4.3 27.0 1.0
CE A:MSE126 4.4 27.9 1.0
OD1 A:ASP215 4.4 24.4 1.0
CG A:GLU182 4.4 17.2 1.0
O1 A:XLS401 4.5 37.6 1.0
O2 A:XLS401 4.5 48.0 1.0
CG A:GLN246 4.6 17.8 1.0
CB A:GLU280 4.7 24.1 1.0
CB A:GLN246 4.8 18.4 1.0
CZ A:ARG252 4.8 30.4 1.0
CE1 A:PHE282 4.8 14.6 1.0
C1 A:XLS401 4.9 51.1 1.0
CZ A:PHE282 4.9 21.3 1.0

Zinc binding site 2 out of 2 in 2qw5

Go back to Zinc Binding Sites List in 2qw5
Zinc binding site 2 out of 2 in the Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Sugar Phosphate Isomerase/Epimerase (AVA4194) From Anabaena Variabilis Atcc 29413 at 1.78 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn400

b:26.8
occ:0.50
O B:HOH404 1.9 25.2 1.0
OE2 B:GLU182 2.1 23.8 1.0
OE1 B:GLU280 2.2 35.3 1.0
OE1 B:GLN246 2.3 25.3 1.0
OD2 B:ASP215 2.4 23.4 1.0
CD B:GLU280 3.0 25.7 1.0
CD B:GLU182 3.1 22.4 1.0
OE2 B:GLU280 3.2 30.4 1.0
CD B:GLN246 3.3 20.4 1.0
CG B:ASP215 3.5 20.4 1.0
OE1 B:GLU182 3.6 25.8 1.0
NE2 B:GLN246 3.8 24.2 1.0
CB B:ASP215 3.8 18.5 1.0
NH2 B:ARG252 3.8 27.5 1.0
NE2 B:HIS218 4.1 15.9 1.0
CD2 B:HIS218 4.2 19.7 1.0
CG B:GLU182 4.3 16.3 1.0
CE B:MSE126 4.3 32.4 1.0
O1 B:XLS401 4.3 41.5 1.0
CG B:GLU280 4.4 26.6 1.0
O2 B:XLS401 4.5 38.4 1.0
OD1 B:ASP215 4.5 19.9 1.0
CG B:GLN246 4.6 18.6 1.0
CB B:GLN246 4.8 13.7 1.0
CB B:GLU280 4.8 20.1 1.0
C1 B:XLS401 4.9 46.9 1.0
CE1 B:PHE282 5.0 19.1 1.0
CZ B:ARG252 5.0 30.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Oct 17 03:36:31 2024

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