Zinc in PDB 2o1q: Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution

The structure of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution, PDB code: 2o1q was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.44 / 1.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.020, 62.020, 133.800, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21

The structure of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution (pdb code 2o1q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution, PDB code: 2o1q:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn145 b:19.7 occ:1.00 ND1 A:HIS101 1.7 10.9 1.0 OXT A:ACT149 1.8 12.7 0.5 NE2 A:HIS59 2.0 22.8 1.0 NE2 A:HIS61 2.1 17.5 1.0 O A:ACT149 2.2 12.6 0.5 C A:ACT149 2.4 17.4 0.5 OXT A:ACT149 2.5 59.6 0.5 CE1 A:HIS101 2.7 26.9 1.0 C A:ACT149 2.7 59.0 0.5 CG A:HIS101 2.8 19.9 1.0 CE1 A:HIS59 2.9 17.3 1.0 CD2 A:HIS59 3.0 20.5 1.0 CD2 A:HIS61 3.0 20.8 1.0 O A:ACT149 3.1 59.6 0.5 CE1 A:HIS61 3.1 20.3 1.0 CB A:HIS101 3.4 19.1 1.0 CH3 A:ACT149 3.4 57.4 0.5 NE2 A:HIS101 3.8 22.9 1.0 CD2 A:HIS101 3.9 26.4 1.0 CH3 A:ACT149 3.9 19.5 0.5 ND1 A:HIS59 4.1 18.9 1.0 CG A:HIS59 4.1 17.6 1.0 ND1 A:HIS61 4.2 18.5 1.0 CG A:HIS61 4.2 19.3 1.0 OG1 A:THR104 4.4 21.4 1.0 CD1 A:LEU120 4.9 25.7 1.0 CA A:HIS101 4.9 16.4 1.0 CD2 A:LEU120 5.0 19.1 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn145 b:20.9 occ:1.00 OXT B:ACT147 1.7 15.3 0.5 ND1 B:HIS101 1.7 14.4 1.0 NE2 B:HIS61 2.0 16.9 1.0 NE2 B:HIS59 2.1 26.6 1.0 O B:ACT147 2.2 13.3 0.5 C B:ACT147 2.4 13.8 0.5 OXT B:ACT147 2.5 25.4 0.5 C B:ACT147 2.5 26.5 0.5 CE1 B:HIS101 2.5 33.5 1.0 O B:ACT147 2.7 22.9 0.5 CG B:HIS101 2.9 17.8 1.0 CE1 B:HIS61 3.0 20.8 1.0 CD2 B:HIS59 3.0 23.9 1.0 CE1 B:HIS59 3.1 18.9 1.0 CD2 B:HIS61 3.1 18.0 1.0 CH3 B:ACT147 3.3 29.0 0.5 CB B:HIS101 3.6 19.3 1.0 NE2 B:HIS101 3.7 21.4 1.0 CH3 B:ACT147 3.9 17.4 0.5 CD2 B:HIS101 3.9 21.9 1.0 ND1 B:HIS61 4.1 22.8 1.0 ND1 B:HIS59 4.2 17.0 1.0 CG B:HIS59 4.2 14.3 1.0 CG B:HIS61 4.2 19.4 1.0 OG1 B:THR104 4.3 18.4 1.0 CE B:MSE114 4.3 16.1 0.5 CD2 B:LEU120 4.8 19.6 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Acetylacetone Dioxygenase (MPE_A3659) From Methylibium Petroleiphilum PM1 at 1.50 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn146 b:32.2 occ:1.00 O B:HOH237 2.0 34.8 1.0 OE2 B:GLU136 2.0 23.4 1.0 OD2 B:ASP137 2.1 21.9 1.0 O B:HOH179 2.2 26.5 1.0 O B:HOH164 2.3 28.4 1.0 O B:HOH203 2.5 46.5 1.0 CD B:GLU136 2.9 23.2 1.0 CG B:ASP137 3.0 19.2 1.0 OE1 B:GLU136 3.2 20.4 1.0 OD1 B:ASP137 3.3 23.3 1.0 O B:VAL132 3.5 21.6 1.0 N B:GLY134 4.2 17.8 1.0 CG B:GLU136 4.3 16.7 1.0 O A:HOH225 4.4 27.6 0.5 CB B:ASP137 4.4 17.2 1.0 C B:VAL132 4.5 18.8 1.0 O A:HOH196 4.5 25.5 1.0 O B:HOH216 4.6 23.6 0.5 N B:ASP137 4.7 15.6 1.0 CA B:GLY134 4.7 19.1 1.0 CA B:ILE133 4.9 16.5 1.0 OD1 A:ASN98 5.0 28.9 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.