Zinc in PDB 2mbv: LMO4-LIM2 in Complex with DEAF1 (404-418)

The binding sites of Zinc atom in the LMO4-LIM2 in Complex with DEAF1 (404-418) (pdb code 2mbv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the LMO4-LIM2 in Complex with DEAF1 (404-418), PDB code: 2mbv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the LMO4-LIM2 in Complex with DEAF1 (404-418)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LMO4-LIM2 in Complex with DEAF1 (404-418) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:0.0 occ:1.00 ND1 A:HIS109 2.0 0.0 1.0 SG A:CYS90 2.3 0.0 1.0 SG A:CYS112 2.3 0.0 1.0 SG A:CYS87 2.3 0.0 1.0 HB2 A:HIS109 2.7 0.0 1.0 CE1 A:HIS109 3.0 0.0 1.0 H A:GLY91 3.0 0.0 1.0 CG A:HIS109 3.0 0.0 1.0 H A:CYS90 3.1 0.0 1.0 HB3 A:CYS87 3.1 0.0 1.0 HE1 A:HIS109 3.2 0.0 1.0 HB3 A:CYS90 3.3 0.0 1.0 CB A:CYS90 3.3 0.0 1.0 CB A:CYS87 3.4 0.0 1.0 CB A:CYS112 3.4 0.0 1.0 HB2 A:CYS112 3.4 0.0 1.0 CB A:HIS109 3.4 0.0 1.0 HB3 A:CYS112 3.5 0.0 1.0 H A:HIS109 3.6 0.0 1.0 N A:CYS90 3.7 0.0 1.0 H A:GLN92 3.7 0.0 1.0 N A:GLY91 3.8 0.0 1.0 HB2 A:CYS87 3.9 0.0 1.0 CA A:CYS90 4.0 0.0 1.0 HB3 A:ALA89 4.0 0.0 1.0 HB3 A:HIS109 4.1 0.0 1.0 NE2 A:HIS109 4.1 0.0 1.0 CD2 A:HIS109 4.2 0.0 1.0 HB2 A:CYS90 4.2 0.0 1.0 N A:HIS109 4.3 0.0 1.0 HB1 A:ALA89 4.4 0.0 1.0 C A:CYS90 4.4 0.0 1.0 H A:CYS87 4.5 0.0 1.0 CA A:HIS109 4.5 0.0 1.0 H A:ALA89 4.5 0.0 1.0 N A:GLN92 4.6 0.0 1.0 CB A:ALA89 4.6 0.0 1.0 CA A:CYS87 4.6 0.0 1.0 C A:ALA89 4.7 0.0 1.0 HA2 A:GLY91 4.7 0.0 1.0 H A:CYS112 4.8 0.0 1.0 HE3 A:LYS111 4.8 0.0 1.0 CA A:CYS112 4.8 0.0 1.0 CA A:GLY91 4.8 0.0 1.0 HB2 A:GLN92 5.0 0.0 1.0 HA A:CYS90 5.0 0.0 1.0 HD2 A:LYS111 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the LMO4-LIM2 in Complex with DEAF1 (404-418)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of LMO4-LIM2 in Complex with DEAF1 (404-418) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:0.0 occ:1.00 OD2 A:ASP140 2.0 0.0 1.0 SG A:CYS118 2.3 0.0 1.0 SG A:CYS137 2.3 0.0 1.0 SG A:CYS115 2.3 0.0 1.0 H A:CYS118 2.7 0.0 1.0 CG A:ASP140 2.9 0.0 1.0 HB3 A:CYS137 3.1 0.0 1.0 HB3 A:ASP140 3.2 0.0 1.0 HB2 A:CYS118 3.2 0.0 1.0 HB2 A:CYS115 3.2 0.0 1.0 H A:ASP140 3.2 0.0 1.0 HB A:THR117 3.3 0.0 1.0 CB A:CYS115 3.3 0.0 1.0 HG1 A:THR117 3.3 0.0 1.0 CB A:CYS118 3.3 0.0 1.0 CB A:CYS137 3.3 0.0 1.0 H A:CYS137 3.4 0.0 1.0 HB3 A:ASN120 3.4 0.0 1.0 N A:CYS118 3.4 0.0 1.0 HB3 A:HIS139 3.5 0.0 1.0 HB3 A:CYS115 3.5 0.0 1.0 CB A:ASP140 3.6 0.0 1.0 H A:ASN120 3.7 0.0 1.0 OD1 A:ASP140 3.8 0.0 1.0 N A:CYS137 3.9 0.0 1.0 N A:ASP140 3.9 0.0 1.0 CA A:CYS118 3.9 0.0 1.0 H A:THR117 4.0 0.0 1.0 OG1 A:THR117 4.1 0.0 1.0 CB A:THR117 4.1 0.0 1.0 CA A:CYS137 4.1 0.0 1.0 H A:ARG119 4.1 0.0 1.0 HB2 A:CYS137 4.2 0.0 1.0 HB3 A:CYS118 4.2 0.0 1.0 HB2 A:ASN120 4.3 0.0 1.0 CB A:ASN120 4.3 0.0 1.0 H A:HIS139 4.3 0.0 1.0 HD21 A:ASN120 4.3 0.0 1.0 CA A:ASP140 4.4 0.0 1.0 C A:THR117 4.4 0.0 1.0 HA A:PHE136 4.4 0.0 1.0 HB2 A:ASP140 4.5 0.0 1.0 CB A:HIS139 4.5 0.0 1.0 C A:CYS118 4.5 0.0 1.0 N A:ARG119 4.6 0.0 1.0 N A:ASN120 4.6 0.0 1.0 CA A:THR117 4.6 0.0 1.0 N A:THR117 4.7 0.0 1.0 C A:CYS137 4.7 0.0 1.0 CA A:CYS115 4.7 0.0 1.0 C A:HIS139 4.8 0.0 1.0 C A:PHE136 4.8 0.0 1.0 HA A:CYS118 4.8 0.0 1.0 HD2 A:HIS139 4.9 0.0 1.0 HB2 A:HIS139 4.9 0.0 1.0 H A:ARG141 4.9 0.0 1.0 HA A:ASP140 4.9 0.0 1.0 N A:HIS139 4.9 0.0 1.0 HB3 A:PHE136 4.9 0.0 1.0 O A:CYS137 5.0 0.0 1.0 CA A:HIS139 5.0 0.0 1.0

S.Joseph, A.H.Kwan, P.Foo, L.Cubeddu, J.P.Mackay, J.M.Matthews. Structural Characterisation of Lim-Only Protein 4 (LMO4) in Complex with Deformed Epidermal Autoregulatory Factor-1 (DEAF1) To Be Published.