Atomistry » Zinc » PDB 2m1r-2mmh » 2m5d
Atomistry »
  Zinc »
    PDB 2m1r-2mmh »
      2m5d »

Zinc in PDB 2m5d: Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid

Enzymatic activity of Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid

All present enzymatic activity of Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid:
3.5.2.6;

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid (pdb code 2m5d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid, PDB code: 2m5d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2m5d

Go back to Zinc Binding Sites List in 2m5d
Zinc binding site 1 out of 2 in the Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:3.1
occ:1.00
HE2 A:HIS149 1.4 0.0 1.0
HE2 A:HIS86 1.6 0.0 1.0
NE2 A:HIS149 2.3 72.0 1.0
ND1 A:HIS88 2.4 74.2 1.0
NE2 A:HIS86 2.4 52.1 1.0
S1 A:RTD303 2.4 13.4 1.0
OD1 A:ASP90 2.8 72.4 1.0
HA A:RTD303 2.8 54.3 1.0
CD2 A:HIS86 3.1 42.4 1.0
HD2 A:HIS86 3.1 2.5 1.0
CD2 A:HIS149 3.1 31.2 1.0
HD2 A:HIS149 3.2 33.4 1.0
HB2 A:HIS88 3.3 0.0 1.0
CA A:RTD303 3.3 21.2 1.0
HB3 A:HIS88 3.3 72.5 1.0
CE1 A:HIS149 3.3 71.5 1.0
CG A:HIS88 3.3 43.3 1.0
SG A:CYS168 3.4 62.4 1.0
CE1 A:HIS88 3.4 62.5 1.0
HD2 A:ASP90 3.4 0.0 1.0
CB A:HIS88 3.5 24.3 1.0
CE1 A:HIS86 3.5 31.4 1.0
HE1 A:HIS149 3.6 55.5 1.0
ZN A:ZN302 3.6 61.1 1.0
HE1 A:HIS88 3.6 12.0 1.0
CG A:ASP90 3.7 53.2 1.0
HE A:ARG91 3.8 4.1 1.0
HE1 A:HIS86 3.9 34.0 1.0
OD2 A:ASP90 3.9 30.4 1.0
HG2 A:ARG91 4.0 0.0 1.0
O2 A:RTD303 4.0 44.4 1.0
C A:RTD303 4.2 55.0 1.0
HE2 A:HIS210 4.2 0.0 1.0
CG A:HIS149 4.3 53.2 1.0
CG A:HIS86 4.3 23.5 1.0
HG21 A:THR150 4.3 4.4 1.0
ND1 A:HIS149 4.4 1.2 1.0
HB2 A:CYS168 4.4 0.0 1.0
CB A:CYS168 4.4 62.2 1.0
HB3 A:CYS168 4.5 24.4 1.0
CB A:RTD303 4.5 32.0 1.0
CD2 A:HIS88 4.5 74.4 1.0
HG1 A:RTD303 4.5 22.0 1.0
ND1 A:HIS86 4.5 22.1 1.0
NE2 A:HIS88 4.5 14.2 1.0
HG3 A:ARG91 4.6 42.4 1.0
NE A:ARG91 4.6 13.3 1.0
HH21 A:ARG91 4.6 31.5 1.0
CG A:ARG91 4.7 32.0 1.0
H A:ASP90 4.8 23.1 1.0
HB3 A:ASP90 4.8 34.4 1.0
CB A:ASP90 4.9 72.5 1.0
CG1 A:RTD303 4.9 60.3 1.0

Zinc binding site 2 out of 2 in 2m5d

Go back to Zinc Binding Sites List in 2m5d
Zinc binding site 2 out of 2 in the Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Bacillus Cereus Metallo-Beta-Lactamase Bcii in Complex with R-Thiomandelic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:61.1
occ:1.00
HE2 A:HIS210 2.1 0.0 1.0
HD2 A:ASP90 2.1 0.0 1.0
OD2 A:ASP90 2.4 30.4 1.0
S1 A:RTD303 2.4 13.4 1.0
SG A:CYS168 2.4 62.4 1.0
NE2 A:HIS210 2.5 30.3 1.0
HH21 A:ARG91 2.5 31.5 1.0
HE1 A:HIS210 2.8 12.1 1.0
CE1 A:HIS210 2.9 1.2 1.0
CG A:ASP90 3.2 53.2 1.0
NH2 A:ARG91 3.5 12.4 1.0
CD2 A:HIS210 3.5 71.5 1.0
ZN A:ZN301 3.6 3.1 1.0
OD1 A:ASP90 3.7 72.4 1.0
HE A:ARG91 3.7 4.1 1.0
O2 A:RTD303 3.8 44.4 1.0
HE2 A:HIS86 3.8 0.0 1.0
HA3 A:GLY209 3.9 23.1 1.0
ND1 A:HIS210 3.9 40.0 1.0
HH22 A:ARG91 4.0 53.5 1.0
CA A:RTD303 4.0 21.2 1.0
CB A:CYS168 4.0 62.2 1.0
O A:GLY209 4.0 62.4 1.0
HD2 A:HIS210 4.1 30.3 1.0
HB3 A:CYS168 4.2 24.4 1.0
HB2 A:SER41 4.2 0.0 1.0
C A:RTD303 4.2 55.0 1.0
CB A:ASP90 4.3 72.5 1.0
HB2 A:ASP90 4.3 0.0 1.0
CG A:HIS210 4.3 54.4 1.0
HE1 A:HIS86 4.4 34.0 1.0
HA A:SER41 4.4 43.3 1.0
HB3 A:ASP90 4.4 34.4 1.0
CZ A:ARG91 4.4 51.2 1.0
NE A:ARG91 4.4 13.3 1.0
HE2 A:HIS149 4.5 0.0 1.0
C A:GLY209 4.5 22.1 1.0
CA A:GLY209 4.5 74.5 1.0
HA2 A:GLY209 4.5 32.2 1.0
HA A:CYS168 4.5 20.4 1.0
HG2 A:RTD303 4.6 43.4 1.0
HA A:RTD303 4.6 54.3 1.0
HD1 A:HIS210 4.6 53.2 1.0
NE2 A:HIS86 4.6 52.1 1.0
H A:CYS168 4.7 14.1 1.0
OG A:SER41 4.8 13.1 1.0
CA A:CYS168 4.8 40.2 1.0
HB2 A:CYS168 4.8 0.0 1.0
NE2 A:HIS149 4.8 72.0 1.0
CB A:SER41 4.9 33.1 1.0
CE1 A:HIS86 4.9 31.4 1.0
HH2 A:TRP59 4.9 54.2 1.0
N A:CYS168 4.9 54.3 1.0
CB A:RTD303 5.0 32.0 1.0

Reference:

A.I.Karsisiotis, C.F.Damblon, G.C.K.Roberts. Solution Structures of the Bacillus Cereus Metallo-Beta-Lactamase Bcii and Its Complex with the Broad Spectrum Inhibitor R-Thiomandelic Acid Biochem.J. 2013.
ISSN: ESSN 1470-8728
PubMed: 24059435
DOI: 10.1042/BJ20131003
Page generated: Thu Oct 17 02:00:25 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy