Zinc in PDB 2lgv: RBX1

The binding sites of Zinc atom in the RBX1 (pdb code 2lgv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the RBX1, PDB code: 2lgv:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the RBX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of RBX1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn109 b:34.1 occ:1.00 SG A:CYS83 2.1 71.2 1.0 ND1 A:HIS80 2.1 32.3 1.0 SG A:CYS45 2.1 23.1 1.0 SG A:CYS42 2.3 22.0 1.0 HB2 A:HIS80 2.4 42.2 1.0 HB3 A:CYS42 2.8 34.5 1.0 CG A:HIS80 2.9 75.2 1.0 CB A:CYS42 3.0 11.1 1.0 HB3 A:CYS45 3.1 45.5 1.0 CB A:HIS80 3.1 32.5 1.0 HB2 A:CYS83 3.2 43.4 1.0 HB2 A:CYS42 3.2 0.5 1.0 CE1 A:HIS80 3.2 2.1 1.0 CB A:CYS83 3.2 62.4 1.0 CB A:CYS45 3.3 73.0 1.0 H A:CYS45 3.3 35.1 1.0 HB3 A:CYS53 3.6 25.4 1.0 HE1 A:HIS80 3.6 2.3 1.0 H A:HIS80 3.6 12.3 1.0 HB3 A:CYS83 3.6 41.2 1.0 HB3 A:HIS80 3.6 63.4 1.0 HA A:CYS53 3.7 21.2 1.0 HB A:ILE44 3.8 35.2 1.0 HB2 A:ASN47 3.9 44.1 1.0 N A:CYS45 4.0 70.1 1.0 HB2 A:CYS45 4.0 42.4 1.0 SG A:CYS53 4.0 31.2 1.0 CD2 A:HIS80 4.1 65.4 1.0 CB A:CYS53 4.2 54.2 1.0 H A:CYS83 4.2 61.3 1.0 NE2 A:HIS80 4.2 64.4 1.0 CA A:CYS45 4.2 30.1 1.0 N A:HIS80 4.3 61.2 1.0 CA A:HIS80 4.3 72.4 1.0 CA A:CYS42 4.4 2.4 1.0 H A:ASN47 4.5 24.3 1.0 CA A:CYS53 4.5 63.1 1.0 H A:ARG46 4.5 73.0 1.0 H A:ILE54 4.6 51.4 1.0 CA A:CYS83 4.6 22.1 1.0 HD21 A:ASN47 4.6 23.1 1.0 O A:CYS42 4.7 42.2 1.0 N A:CYS83 4.7 54.5 1.0 H A:ILE44 4.8 42.5 1.0 C A:CYS42 4.8 44.2 1.0 CB A:ILE44 4.8 35.2 1.0 HA A:CYS42 4.9 10.2 1.0 HA A:CYS83 5.0 23.1 1.0 C A:ILE44 5.0 12.2 1.0 HA A:HIS80 5.0 61.5 1.0 CB A:ASN47 5.0 12.3 1.0

Zinc binding site 2 out of 3 in the RBX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of RBX1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn110 b:74.2 occ:1.00 SG A:CYS56 2.2 65.3 1.0 ND1 A:HIS82 2.2 21.3 1.0 SG A:CYS68 2.3 70.3 1.0 SG A:CYS53 2.5 31.2 1.0 HB2 A:CYS53 2.8 10.3 1.0 CE1 A:HIS82 3.1 2.4 1.0 CG A:HIS82 3.2 12.3 1.0 CB A:CYS53 3.2 54.2 1.0 HE1 A:HIS82 3.3 25.4 1.0 HB3 A:HIS82 3.3 65.1 1.0 HB2 A:HIS82 3.5 31.4 1.0 CB A:CYS56 3.5 44.5 1.0 CB A:HIS82 3.6 60.3 1.0 HB3 A:CYS56 3.6 71.2 1.0 HG1 A:THR69 3.7 42.5 1.0 HB2 A:CYS56 3.7 41.3 1.0 H A:CYS53 3.7 10.3 1.0 CB A:CYS68 3.7 50.1 1.0 HB3 A:CYS68 3.8 50.4 1.0 HB3 A:CYS53 3.9 25.4 1.0 HB2 A:CYS68 4.0 43.3 1.0 NE2 A:HIS82 4.1 22.1 1.0 OG1 A:THR69 4.1 20.4 1.0 CD2 A:HIS82 4.2 30.0 1.0 N A:CYS53 4.4 61.3 1.0 CA A:CYS53 4.4 63.1 1.0 HE2 A:HIS82 4.7 0.0 1.0 H A:CYS56 4.7 64.2 1.0 CA A:CYS56 4.8 55.5 1.0 HA A:CYS56 5.0 44.0 1.0

Zinc binding site 3 out of 3 in the RBX1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of RBX1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn111 b:43.3 occ:1.00 OD2 A:ASP97 1.9 70.2 1.0 SG A:CYS75 2.2 72.1 1.0 SG A:CYS94 2.2 71.5 1.0 ND1 A:HIS77 2.3 31.3 1.0 HB2 A:CYS75 2.3 60.4 1.0 CB A:CYS75 2.7 64.0 1.0 HB2 A:ASP97 2.9 5.4 1.0 CE1 A:HIS77 2.9 51.3 1.0 CG A:ASP97 2.9 72.2 1.0 HE1 A:HIS77 3.0 32.5 1.0 HB3 A:CYS75 3.2 41.5 1.0 CG A:HIS77 3.4 33.2 1.0 CB A:ASP97 3.4 45.1 1.0 HB2 A:HIS77 3.4 75.2 1.0 CB A:CYS94 3.5 54.4 1.0 HB3 A:CYS94 3.5 23.3 1.0 HE3 A:TRP101 3.6 15.4 1.0 HB2 A:CYS94 3.8 43.3 1.0 O A:CYS75 3.9 14.3 1.0 OD1 A:ASP97 3.9 21.1 1.0 HB3 A:ASP97 3.9 4.1 1.0 NE2 A:HIS77 4.0 51.1 1.0 CB A:HIS77 4.0 64.1 1.0 CA A:CYS75 4.0 21.3 1.0 HB2 A:ARG99 4.1 74.3 1.0 CD2 A:HIS77 4.2 15.0 1.0 C A:CYS75 4.2 65.2 1.0 H A:ASP97 4.2 72.4 1.0 HA A:TRP101 4.3 65.1 1.0 HE2 A:PHE79 4.4 23.2 1.0 HZ3 A:TRP101 4.4 24.2 1.0 H A:CYS75 4.4 43.2 1.0 CE3 A:TRP101 4.4 62.3 1.0 HE2 A:HIS77 4.6 0.0 1.0 HB3 A:HIS77 4.6 43.5 1.0 HA A:CYS75 4.7 24.0 1.0 CA A:ASP97 4.7 74.5 1.0 N A:CYS75 4.7 63.2 1.0 CA A:CYS94 4.8 31.4 1.0 CZ3 A:TRP101 4.8 51.2 1.0 N A:ASP97 4.9 62.0 1.0 HA A:CYS94 4.9 33.4 1.0 H A:CYS94 4.9 55.1 1.0

D.E.Spratt, K.Wu, J.Kovacev, Z.Q.Pan, G.S.Shaw. Selective Recruitment of An E2~Ubiquitin Complex By An E3 Ubiquitin Ligase. J.Biol.Chem. V. 287 17374 2012.
ISSN: ISSN 0021-9258
PubMed: 22433864
DOI: 10.1074/JBC.M112.353748