Atomistry » Zinc » PDB 2kzz-2lgl » 2l4l
Atomistry »
  Zinc »
    PDB 2kzz-2lgl »
      2l4l »

Zinc in PDB 2l4l: Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc (pdb code 2l4l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc, PDB code: 2l4l:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2l4l

Go back to Zinc Binding Sites List in 2l4l
Zinc binding site 1 out of 2 in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn56

b:2.0
occ:7.00
NE2 A:HIS23 1.9 0.0 1.0
HB2 A:CYS28 1.9 0.0 1.0
HB2 A:CYS18 2.0 0.0 1.0
SG A:CYS15 2.0 0.0 1.0
HE1 A:HIS23 2.3 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
SG A:CYS28 2.4 0.0 1.0
CE1 A:HIS23 2.4 0.0 1.0
HB3 A:CYS15 2.4 0.0 1.0
CB A:CYS15 2.5 0.0 1.0
CB A:CYS28 2.5 0.0 1.0
HB2 A:CYS15 2.6 0.0 1.0
CB A:CYS18 2.6 0.0 1.0
HB3 A:CYS28 3.1 0.0 1.0
CD2 A:HIS23 3.2 0.0 1.0
HB3 A:CYS18 3.2 0.0 1.0
HB3 A:LYS20 3.5 0.0 1.0
HA A:ALA25 3.7 0.0 1.0
ND1 A:HIS23 3.7 0.0 1.0
H A:CYS18 3.7 0.0 1.0
O A:LYS20 3.7 0.0 1.0
H A:LYS20 3.7 0.0 1.0
CA A:CYS18 3.7 0.0 1.0
HD2 A:HIS23 3.8 0.0 1.0
CA A:CYS28 3.8 0.0 1.0
HA A:CYS28 3.9 0.0 1.0
H A:GLY19 3.9 0.0 1.0
H A:CYS28 3.9 0.0 1.0
CA A:CYS15 4.0 0.0 1.0
CG A:HIS23 4.1 0.0 1.0
N A:CYS18 4.1 0.0 1.0
C A:CYS18 4.1 0.0 1.0
N A:GLY19 4.2 0.0 1.0
H A:CYS15 4.2 0.0 1.0
N A:LYS20 4.2 0.0 1.0
N A:CYS28 4.3 0.0 1.0
N A:ALA25 4.3 0.0 1.0
H A:ALA25 4.4 0.0 1.0
CA A:ALA25 4.4 0.0 1.0
HD1 A:HIS23 4.5 0.0 1.0
HA A:CYS15 4.5 0.0 1.0
CB A:LYS20 4.5 0.0 1.0
N A:CYS15 4.5 0.0 1.0
C A:LYS20 4.5 0.0 1.0
O A:ALA25 4.6 0.0 1.0
HA A:CYS18 4.6 0.0 1.0
CA A:LYS20 4.7 0.0 1.0
C A:THR24 4.7 0.0 1.0
HA A:THR24 4.8 0.0 1.0
C A:CYS15 4.8 0.0 1.0
HB1 A:ALA30 4.9 0.0 1.0
C A:ALA25 4.9 0.0 1.0
C A:CYS28 4.9 0.0 1.0
C A:GLY19 4.9 0.0 1.0
O A:CYS18 5.0 0.0 1.0
HB2 A:LYS20 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2l4l

Go back to Zinc Binding Sites List in 2l4l
Zinc binding site 2 out of 2 in the Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn57

b:2.0
occ:7.00
HB3 A:CYS49 1.8 0.0 1.0
HB2 A:CYS39 2.0 0.0 1.0
SG A:CYS36 2.1 0.0 1.0
NE2 A:HIS44 2.1 0.0 1.0
SG A:CYS49 2.3 0.0 1.0
CB A:CYS49 2.3 0.0 1.0
SG A:CYS39 2.5 0.0 1.0
HB3 A:CYS36 2.6 0.0 1.0
CB A:CYS39 2.6 0.0 1.0
CB A:CYS36 2.7 0.0 1.0
HB2 A:CYS49 2.7 0.0 1.0
HE1 A:HIS44 2.7 0.0 1.0
CE1 A:HIS44 2.7 0.0 1.0
HB2 A:LYS41 2.7 0.0 1.0
HB2 A:CYS36 2.8 0.0 1.0
HB3 A:CYS39 3.2 0.0 1.0
CD2 A:HIS44 3.3 0.0 1.0
H A:LYS41 3.7 0.0 1.0
CA A:CYS49 3.7 0.0 1.0
HD2 A:HIS44 3.8 0.0 1.0
CB A:LYS41 3.8 0.0 1.0
CA A:CYS39 3.8 0.0 1.0
H A:GLY40 4.0 0.0 1.0
H A:CYS49 4.0 0.0 1.0
ND1 A:HIS44 4.0 0.0 1.0
N A:LYS41 4.0 0.0 1.0
H A:CYS39 4.0 0.0 1.0
HD2 A:LYS41 4.1 0.0 1.0
C A:CYS39 4.1 0.0 1.0
O A:MET46 4.1 0.0 1.0
N A:GLY40 4.1 0.0 1.0
CA A:CYS36 4.1 0.0 1.0
H A:CYS36 4.2 0.0 1.0
O A:GLN45 4.2 0.0 1.0
HA A:MET46 4.2 0.0 1.0
C A:CYS49 4.3 0.0 1.0
CG A:HIS44 4.3 0.0 1.0
N A:CYS49 4.3 0.0 1.0
CA A:LYS41 4.3 0.0 1.0
HB3 A:LYS41 4.4 0.0 1.0
O A:LYS41 4.4 0.0 1.0
N A:CYS39 4.4 0.0 1.0
HG3 A:LYS41 4.4 0.0 1.0
HA A:CYS49 4.4 0.0 1.0
HB3 A:GLU51 4.5 0.0 1.0
C A:LYS41 4.5 0.0 1.0
CG A:LYS41 4.6 0.0 1.0
N A:CYS36 4.6 0.0 1.0
HA A:CYS39 4.7 0.0 1.0
C A:GLY40 4.7 0.0 1.0
H A:THR50 4.7 0.0 1.0
HA A:CYS36 4.7 0.0 1.0
N A:THR50 4.7 0.0 1.0
O A:CYS49 4.8 0.0 1.0
HD1 A:HIS44 4.8 0.0 1.0
O A:CYS39 4.8 0.0 1.0
CD A:LYS41 4.8 0.0 1.0
C A:MET46 4.9 0.0 1.0
C A:CYS36 4.9 0.0 1.0

Reference:

A.Bazzi, L.Zargarian, F.Chaminade, C.Boudier, H.De Rocquigny, B.Rene, Y.Mely, P.Fosse, O.Mauffret. Structural Insights Into the Ctar Dna Recognition By the Hiv-1 Nucleocapsid Protein: Role of Sugar Deoxyriboses in the Binding Polarity of Nc. Nucleic Acids Res. V. 39 3903 2011.
ISSN: ISSN 0305-1048
PubMed: 21227929
DOI: 10.1093/NAR/GKQ1290
Page generated: Thu Oct 17 01:45:04 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy