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Zinc in PDB 2kgg: Solution Structure of JARID1A C-Terminal Phd Finger

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of JARID1A C-Terminal Phd Finger (pdb code 2kgg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of JARID1A C-Terminal Phd Finger, PDB code: 2kgg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2kgg

Go back to Zinc Binding Sites List in 2kgg
Zinc binding site 1 out of 2 in the Solution Structure of JARID1A C-Terminal Phd Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of JARID1A C-Terminal Phd Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn53

b:0.0
occ:1.00
SG A:CYS25 2.3 0.0 1.0
SG A:CYS51 2.3 0.0 1.0
SG A:CYS48 2.3 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
HB2 A:CYS25 3.0 0.0 1.0
HB2 A:CYS21 3.1 0.0 1.0
H A:CYS51 3.2 0.0 1.0
H A:CYS25 3.2 0.0 1.0
CB A:CYS25 3.2 0.0 1.0
HB3 A:CYS48 3.2 0.0 1.0
CB A:CYS21 3.3 0.0 1.0
CB A:CYS48 3.4 0.0 1.0
HB2 A:CYS51 3.4 0.0 1.0
CB A:CYS51 3.4 0.0 1.0
HZ A:PHE29 3.5 0.0 1.0
H A:CYS48 3.5 0.0 1.0
HB2 A:ASN50 3.5 0.0 1.0
N A:CYS51 3.7 0.0 1.0
HB3 A:CYS21 3.8 0.0 1.0
N A:CYS25 3.9 0.0 1.0
HB3 A:CYS25 4.0 0.0 1.0
CA A:CYS51 4.0 0.0 1.0
CA A:CYS25 4.2 0.0 1.0
HB2 A:CYS48 4.2 0.0 1.0
N A:CYS48 4.2 0.0 1.0
HA A:CYS51 4.3 0.0 1.0
HB3 A:CYS51 4.3 0.0 1.0
O A:CYS21 4.3 0.0 1.0
CA A:CYS48 4.4 0.0 1.0
CZ A:PHE29 4.4 0.0 1.0
HE1 A:PHE29 4.4 0.0 1.0
H A:ASN50 4.4 0.0 1.0
H A:ASP26 4.5 0.0 1.0
CB A:ASN50 4.5 0.0 1.0
H A:GLY23 4.5 0.0 1.0
C A:ASN50 4.6 0.0 1.0
CA A:CYS21 4.7 0.0 1.0
H A:GLY24 4.8 0.0 1.0
H A:GLU27 4.8 0.0 1.0
C A:CYS21 4.8 0.0 1.0
HB3 A:ASN50 4.8 0.0 1.0
C A:CYS48 4.8 0.0 1.0
CE1 A:PHE29 4.8 0.0 1.0
HA A:CYS25 4.9 0.0 1.0
CA A:ASN50 4.9 0.0 1.0
HA3 A:GLY23 4.9 0.0 1.0
N A:ASN50 4.9 0.0 1.0
N A:GLY24 5.0 0.0 1.0
O A:CYS48 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2kgg

Go back to Zinc Binding Sites List in 2kgg
Zinc binding site 2 out of 2 in the Solution Structure of JARID1A C-Terminal Phd Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of JARID1A C-Terminal Phd Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn54

b:0.0
occ:1.00
ND1 A:HIS30 2.0 0.0 1.0
SG A:CYS3 2.3 0.0 1.0
SG A:CYS8 2.3 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
HB2 A:HIS30 2.6 0.0 1.0
CG A:HIS30 3.0 0.0 1.0
H A:HIS30 3.0 0.0 1.0
CE1 A:HIS30 3.0 0.0 1.0
HB3 A:CYS3 3.2 0.0 1.0
HE1 A:HIS30 3.3 0.0 1.0
HB2 A:CYS8 3.3 0.0 1.0
CB A:HIS30 3.3 0.0 1.0
HB3 A:CYS33 3.4 0.0 1.0
CB A:CYS3 3.4 0.0 1.0
CB A:CYS8 3.4 0.0 1.0
CB A:CYS33 3.4 0.0 1.0
HB2 A:CYS33 3.6 0.0 1.0
N A:HIS30 3.7 0.0 1.0
HA A:CYS8 3.9 0.0 1.0
HB3 A:ALA5 3.9 0.0 1.0
H A:ARG10 3.9 0.0 1.0
H A:CYS3 4.0 0.0 1.0
HB3 A:HIS30 4.1 0.0 1.0
CA A:HIS30 4.1 0.0 1.0
HB2 A:CYS3 4.1 0.0 1.0
NE2 A:HIS30 4.1 0.0 1.0
HA A:ARG10 4.1 0.0 1.0
HD2 A:PRO11 4.1 0.0 1.0
CD2 A:HIS30 4.1 0.0 1.0
HB1 A:ALA5 4.1 0.0 1.0
HA A:PHE29 4.2 0.0 1.0
CA A:CYS8 4.2 0.0 1.0
HD3 A:PRO11 4.3 0.0 1.0
HB3 A:CYS8 4.3 0.0 1.0
H A:GLN9 4.4 0.0 1.0
CA A:CYS3 4.5 0.0 1.0
CB A:ALA5 4.5 0.0 1.0
C A:PHE29 4.6 0.0 1.0
N A:ARG10 4.7 0.0 1.0
N A:CYS3 4.7 0.0 1.0
O A:ALA4 4.7 0.0 1.0
CD A:PRO11 4.7 0.0 1.0
C A:CYS3 4.7 0.0 1.0
HA A:HIS30 4.8 0.0 1.0
N A:GLN9 4.8 0.0 1.0
C A:CYS8 4.9 0.0 1.0
CA A:CYS33 4.9 0.0 1.0
CA A:PHE29 4.9 0.0 1.0
CA A:ARG10 5.0 0.0 1.0
HE2 A:HIS30 5.0 0.0 1.0

Reference:

G.G.Wang, J.Song, Z.Wang, H.L.Dormann, F.Casadio, H.Li, J.L.Luo, D.J.Patel, C.D.Allis. Haematopoietic Malignancies Caused By Dysregulation of A Chromatin-Binding Phd Finger. Nature V. 459 847 2009.
ISSN: ISSN 0028-0836
PubMed: 19430464
DOI: 10.1038/NATURE08036
Page generated: Thu Oct 17 01:35:18 2024

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