Zinc in PDB 2jun: Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers

The binding sites of Zinc atom in the Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers (pdb code 2jun). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers, PDB code: 2jun:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn220 b:4.4 occ:1.00 SG A:CYS119 2.3 23.3 1.0 SG A:CYS142 2.4 74.3 1.0 SG A:CYS122 2.4 73.3 1.0 SG A:CYS145 2.4 2.4 1.0 HB3 A:CYS119 3.0 31.3 1.0 H A:CYS142 3.1 32.1 1.0 CB A:CYS119 3.1 45.4 1.0 H A:CYS145 3.2 4.4 1.0 HB2 A:CYS119 3.3 5.5 1.0 HB3 A:CYS142 3.4 53.2 1.0 HB2 A:CYS145 3.5 1.2 1.0 CB A:CYS122 3.5 34.2 1.0 CB A:CYS142 3.5 43.3 1.0 HB2 A:CYS122 3.5 41.3 1.0 HA A:CYS122 3.6 23.0 1.0 CB A:CYS145 3.6 71.3 1.0 N A:CYS142 4.0 63.4 1.0 O A:PHE121 4.0 41.2 1.0 CA A:CYS122 4.0 64.3 1.0 HB3 A:GLU144 4.0 72.2 1.0 N A:CYS145 4.1 74.3 1.0 HB3 A:GLN128 4.1 73.1 1.0 C A:PHE121 4.2 44.4 1.0 CA A:CYS142 4.3 22.3 1.0 N A:CYS122 4.3 14.2 1.0 HB3 A:TYR141 4.3 61.1 1.0 HB2 A:CYS142 4.4 43.0 1.0 HB3 A:CYS145 4.4 30.5 1.0 HB2 A:GLU144 4.4 32.2 1.0 CA A:CYS145 4.4 44.2 1.0 HB3 A:CYS122 4.5 1.3 1.0 CA A:CYS119 4.5 54.4 1.0 HB2 A:GLN128 4.5 60.3 1.0 H A:GLN128 4.7 12.3 1.0 CB A:GLU144 4.7 35.3 1.0 C A:CYS142 4.8 13.1 1.0 CB A:GLN128 4.8 13.0 1.0 H A:PHE121 4.9 34.1 1.0 HA A:CYS119 4.9 44.4 1.0 H A:CYS122 4.9 34.1 1.0 HB2 A:PHE121 4.9 12.4 1.0 HA A:CYS145 4.9 54.1 1.0 O A:CYS142 4.9 71.2 1.0 HA A:TYR141 4.9 14.2 1.0

Zinc binding site 2 out of 4 in the Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn221 b:22.0 occ:1.00 NE2 A:HIS150 2.1 34.3 1.0 ND1 A:HIS159 2.1 25.2 1.0 SG A:CYS134 2.3 41.1 1.0 SG A:CYS137 2.4 22.4 1.0 CE1 A:HIS150 2.7 71.2 1.0 HE1 A:HIS150 2.7 4.4 1.0 CE1 A:HIS159 2.8 60.2 1.0 HE1 A:HIS159 3.0 32.3 1.0 HB3 A:CYS134 3.1 3.3 1.0 CG A:HIS159 3.1 3.2 1.0 CB A:CYS134 3.1 63.5 1.0 HB3 A:HIS159 3.2 42.3 1.0 HB2 A:CYS134 3.2 45.4 1.0 CD2 A:HIS150 3.3 71.4 1.0 HB2 A:CYS137 3.3 60.3 1.0 CB A:CYS137 3.5 32.0 1.0 HB A:THR136 3.6 24.4 1.0 CB A:HIS159 3.7 42.3 1.0 NE2 A:HIS159 3.8 34.5 1.0 HD2 A:HIS150 3.8 34.2 1.0 ND1 A:HIS150 3.9 33.4 1.0 H A:CYS137 3.9 61.3 1.0 CD2 A:HIS159 3.9 32.3 1.0 N A:CYS137 4.1 45.4 1.0 CG A:HIS150 4.2 50.2 1.0 HB2 A:HIS159 4.2 23.4 1.0 CA A:CYS137 4.3 35.5 1.0 HB3 A:CYS137 4.4 61.1 1.0 CA A:CYS134 4.5 45.0 1.0 HA A:CYS137 4.6 11.6 1.0 CB A:THR136 4.7 51.3 1.0 C A:THR136 4.7 4.3 1.0 H A:THR136 4.8 53.3 1.0 HD2 A:HIS159 4.9 44.3 1.0 HA A:HIS159 4.9 45.3 1.0 HA A:CYS134 4.9 13.5 1.0 CA A:HIS159 4.9 21.4 1.0 HB A:THR149 4.9 11.0 1.0 HG22 A:THR136 4.9 51.3 1.0

Zinc binding site 3 out of 4 in the Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn222 b:23.3 occ:1.00 ND1 A:HIS178 2.1 64.1 1.0 SG A:CYS175 2.3 62.1 1.0 SG A:CYS195 2.4 2.4 1.0 SG A:CYS198 2.4 25.4 1.0 CE1 A:HIS178 2.9 11.0 1.0 HE1 A:HIS178 2.9 52.1 1.0 HB3 A:CYS175 3.0 32.5 1.0 CB A:CYS175 3.1 61.0 1.0 HB2 A:CYS175 3.3 21.5 1.0 CG A:HIS178 3.3 3.2 1.0 HB2 A:HIS178 3.3 3.2 1.0 H A:CYS195 3.8 74.0 1.0 CB A:CYS198 3.8 31.1 1.0 HB2 A:CYS198 3.8 23.4 1.0 CB A:HIS178 3.8 45.4 1.0 HB3 A:CYS195 3.8 12.3 1.0 CB A:CYS195 3.9 51.2 1.0 NE2 A:HIS178 4.0 73.1 1.0 HB3 A:LEU197 4.1 2.1 1.0 HB3 A:HIS178 4.2 74.2 1.0 H A:CYS198 4.2 24.4 1.0 CD2 A:HIS178 4.3 44.5 1.0 H A:LEU176 4.3 63.3 1.0 HA A:CYS198 4.4 72.0 1.0 N A:CYS198 4.4 63.1 1.0 CA A:CYS198 4.5 61.4 1.0 HD22 A:LEU197 4.5 43.5 1.0 N A:CYS195 4.5 25.3 1.0 CA A:CYS175 4.5 23.1 1.0 HB2 A:CYS195 4.6 15.4 1.0 HB3 A:CYS198 4.6 41.2 1.0 CA A:CYS195 4.7 72.5 1.0 HA A:CYS175 4.7 35.4 1.0 H A:GLU177 4.9 52.5 1.0 HH11 A:ARG203 4.9 71.2 1.0 N A:LEU176 5.0 64.5 1.0 O A:CYS195 5.0 21.5 1.0

Zinc binding site 4 out of 4 in the Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn223 b:53.3 occ:1.00 ND1 A:HIS207 2.1 13.1 1.0 ND1 A:HIS204 2.1 24.3 1.0 SG A:CYS187 2.3 32.2 1.0 OD2 A:ASP190 2.4 73.3 1.0 HE1 A:HIS204 2.4 20.1 1.0 CE1 A:HIS204 2.5 34.5 1.0 CE1 A:HIS207 2.7 43.2 1.0 HE1 A:HIS207 2.7 12.0 1.0 HB2 A:CYS187 3.0 14.4 1.0 CB A:CYS187 3.1 53.3 1.0 CG A:ASP190 3.1 2.0 1.0 HB3 A:CYS187 3.2 4.1 1.0 CG A:HIS207 3.3 51.1 1.0 CG A:HIS204 3.4 55.3 1.0 HB2 A:ASP190 3.5 75.1 1.0 HB3 A:HIS207 3.6 23.2 1.0 NE2 A:HIS204 3.7 1.3 1.0 OD1 A:ASP190 3.8 63.3 1.0 HB3 A:HIS204 3.8 52.1 1.0 NE2 A:HIS207 3.8 42.5 1.0 HG23 A:ILE194 3.9 50.5 1.0 CB A:ASP190 3.9 10.4 1.0 CB A:HIS207 3.9 12.4 1.0 HD11 A:ILE194 4.0 44.0 1.0 HB A:THR189 4.0 35.1 1.0 H A:ASP190 4.1 1.3 1.0 HB2 A:HIS207 4.1 5.5 1.0 CD2 A:HIS207 4.1 1.1 1.0 CB A:HIS204 4.2 42.4 1.0 CD2 A:HIS204 4.2 24.4 1.0 HA A:HIS204 4.3 34.5 1.0 CA A:CYS187 4.5 25.4 1.0 N A:ASP190 4.6 41.3 1.0 HB3 A:ASP190 4.6 25.4 1.0 HA A:CYS187 4.8 75.4 1.0 CG2 A:ILE194 4.8 53.4 1.0 CA A:HIS204 4.9 60.4 1.0 CA A:ASP190 4.9 22.2 1.0 O A:ARG203 5.0 31.4 1.0

H.Tao, B.N.Simmons, S.Singireddy, M.Jakkidi, K.M.Short, T.C.Cox, M.A.Massiah. Structure of the MID1 Tandem B-Boxes Reveals An Interaction Reminiscent of Intermolecular Ring Heterodimers Biochemistry V. 47 2450 2008.
ISSN: ISSN 0006-2960
PubMed: 18220417
DOI: 10.1021/BI7018496