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Zinc in PDB 2jt6: Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII)

Enzymatic activity of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII)

All present enzymatic activity of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII):
3.4.24.17;

Other elements in 2jt6:

The structure of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII) also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII) (pdb code 2jt6). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII), PDB code: 2jt6:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2jt6

Go back to Zinc Binding Sites List in 2jt6
Zinc binding site 1 out of 2 in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn256

b:0.0
occ:1.00
NE2 A:HIS201 2.1 0.0 1.0
NE2 A:HIS205 2.1 0.0 1.0
O4 A:JT61 2.1 0.0 1.0
NE2 A:HIS211 2.2 0.0 1.0
O5 A:JT61 2.3 0.0 1.0
C1 A:JT61 2.6 0.0 1.0
N2 A:JT61 2.6 0.0 1.0
HD2 A:HIS211 2.9 0.0 1.0
CD2 A:HIS211 2.9 0.0 1.0
CE1 A:HIS201 3.0 0.0 1.0
CE1 A:HIS205 3.1 0.0 1.0
CD2 A:HIS201 3.1 0.0 1.0
CD2 A:HIS205 3.1 0.0 1.0
HE1 A:HIS201 3.3 0.0 1.0
HE1 A:HIS205 3.3 0.0 1.0
HD2 A:HIS201 3.3 0.0 1.0
HD2 A:HIS205 3.3 0.0 1.0
CE1 A:HIS211 3.4 0.0 1.0
H22 A:JT61 3.7 0.0 1.0
HE1 A:HIS211 3.8 0.0 1.0
H30 A:JT61 3.9 0.0 1.0
HE2 A:GLU202 4.0 0.0 1.0
C3 A:JT61 4.1 0.0 1.0
HA A:PRO221 4.2 0.0 1.0
ND1 A:HIS201 4.2 0.0 1.0
ND1 A:HIS205 4.2 0.0 1.0
CG A:HIS211 4.2 0.0 1.0
CG A:HIS201 4.2 0.0 1.0
CG A:HIS205 4.3 0.0 1.0
ND1 A:HIS211 4.4 0.0 1.0
H23 A:JT61 4.6 0.0 1.0
HE1 A:MET219 4.6 0.0 1.0
H26 A:JT61 4.7 0.0 1.0
OE2 A:GLU202 4.7 0.0 1.0
HE3 A:MET219 4.7 0.0 1.0
H24 A:JT61 4.8 0.0 1.0
C13 A:JT61 4.9 0.0 1.0
O A:PHE210 5.0 0.0 1.0
C6 A:JT61 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2jt6

Go back to Zinc Binding Sites List in 2jt6
Zinc binding site 2 out of 2 in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of 3-4'-Cyanobyphenyl-4-Yloxy)-N- Hdydroxypropionamide (Mmp-3 Inhibitor VII) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn257

b:0.0
occ:1.00
NE2 A:HIS151 2.1 0.0 1.0
NE2 A:HIS166 2.1 0.0 1.0
OD1 A:ASP153 2.2 0.0 1.0
ND1 A:HIS179 2.2 0.0 1.0
OD2 A:ASP153 2.5 0.0 1.0
CG A:ASP153 2.7 0.0 1.0
HB2 A:HIS179 3.0 0.0 1.0
CE1 A:HIS166 3.0 0.0 1.0
CE1 A:HIS151 3.1 0.0 1.0
CE1 A:HIS179 3.1 0.0 1.0
CD2 A:HIS151 3.1 0.0 1.0
CG A:HIS179 3.1 0.0 1.0
CD2 A:HIS166 3.1 0.0 1.0
HE1 A:HIS166 3.2 0.0 1.0
HE1 A:HIS151 3.3 0.0 1.0
HE1 A:HIS179 3.3 0.0 1.0
HD2 A:HIS151 3.3 0.0 1.0
HD2 A:HIS166 3.4 0.0 1.0
CB A:HIS179 3.5 0.0 1.0
HB3 A:HIS179 3.7 0.0 1.0
CB A:ASP153 4.1 0.0 1.0
NE2 A:HIS179 4.2 0.0 1.0
ND1 A:HIS166 4.2 0.0 1.0
ND1 A:HIS151 4.2 0.0 1.0
CD2 A:HIS179 4.2 0.0 1.0
CG A:HIS151 4.2 0.0 1.0
HB2 A:PHE154 4.3 0.0 1.0
CG A:HIS166 4.3 0.0 1.0
HB3 A:ALA147 4.3 0.0 1.0
HB2 A:ASP153 4.4 0.0 1.0
HB3 A:ASP153 4.6 0.0 1.0
HE2 A:TYR168 4.7 0.0 1.0
HB1 A:ALA147 4.7 0.0 1.0
HB3 A:PHE154 4.7 0.0 1.0
H2 A:ASP153 4.7 0.0 1.0
CA A:HIS179 4.9 0.0 1.0
CB A:ALA147 5.0 0.0 1.0

Reference:

L.A.Alcaraz, L.Banci, I.Bertini, F.Cantini, A.Donaire, L.Gonnelli. Matrix Metalloproteinase-Inhibitor Interaction: the Solution Structure of the Catalytic Domain of Human Matrix Metalloproteinase-3 with Different Inhibitors J.Biol.Inorg.Chem. V. 12 1197 2007.
ISSN: ISSN 0949-8257
PubMed: 17710450
DOI: 10.1007/S00775-007-0288-9
Page generated: Thu Oct 17 01:22:08 2024

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