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Zinc in PDB 2ida: Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313.

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313. (pdb code 2ida). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313., PDB code: 2ida:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ida

Go back to Zinc Binding Sites List in 2ida
Zinc binding site 1 out of 2 in the Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn103

b:0.0
occ:1.00
OD1 A:ASP81 1.9 0.0 1.0
ND1 A:HIS7 2.1 0.0 1.0
SG A:CYS5 2.3 0.0 1.0
SG A:CYS78 2.4 0.0 1.0
CG A:ASP81 2.6 0.0 1.0
HB2 A:HIS7 2.8 0.0 1.0
OD2 A:ASP81 3.0 0.0 1.0
CE1 A:HIS7 3.1 0.0 1.0
CG A:HIS7 3.1 0.0 1.0
HG23 A:VAL80 3.2 0.0 1.0
HE1 A:HIS7 3.3 0.0 1.0
CB A:HIS7 3.4 0.0 1.0
HB2 A:CYS5 3.5 0.0 1.0
HB3 A:CYS78 3.5 0.0 1.0
CB A:CYS5 3.6 0.0 1.0
CB A:CYS78 3.6 0.0 1.0
HB2 A:ASP81 3.6 0.0 1.0
CB A:ASP81 3.7 0.0 1.0
HB2 A:CYS78 3.8 0.0 1.0
HB3 A:CYS5 3.9 0.0 1.0
H A:HIS7 3.9 0.0 1.0
HG21 A:VAL80 3.9 0.0 1.0
CG2 A:VAL80 3.9 0.0 1.0
HB3 A:HIS7 4.0 0.0 1.0
HG22 A:VAL80 4.1 0.0 1.0
HD11 A:ILE65 4.2 0.0 1.0
NE2 A:HIS7 4.2 0.0 1.0
CD2 A:HIS7 4.2 0.0 1.0
H A:ASP81 4.3 0.0 1.0
HB3 A:ASP81 4.4 0.0 1.0
N A:ASP81 4.6 0.0 1.0
HB2 A:PRO64 4.6 0.0 1.0
HD2 A:ARG6 4.6 0.0 1.0
HH11 A:ARG6 4.6 0.0 1.0
N A:HIS7 4.6 0.0 1.0
CA A:HIS7 4.7 0.0 1.0
HG13 A:ILE65 4.7 0.0 1.0
HG12 A:ILE65 4.7 0.0 1.0
HG22 A:VAL83 4.7 0.0 1.0
CA A:ASP81 4.7 0.0 1.0
CA A:CYS5 4.9 0.0 1.0
CA A:CYS78 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 2ida

Go back to Zinc Binding Sites List in 2ida
Zinc binding site 2 out of 2 in the Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution uc(Nmr) Structure of Protein RPA1320 From Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RPT3; Ontario Center For Structural Proteomics Target RP1313. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn104

b:0.0
occ:1.00
NE2 A:HIS57 2.1 0.0 1.0
ND1 A:HIS63 2.1 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
SG A:CYS40 2.4 0.0 1.0
CE1 A:HIS57 3.1 0.0 1.0
HB2 A:HIS63 3.1 0.0 1.0
CE1 A:HIS63 3.1 0.0 1.0
CD2 A:HIS57 3.1 0.0 1.0
CG A:HIS63 3.1 0.0 1.0
HE1 A:HIS63 3.3 0.0 1.0
HE1 A:HIS57 3.3 0.0 1.0
HD2 A:HIS57 3.3 0.0 1.0
HB2 A:CYS37 3.4 0.0 1.0
HB3 A:CYS40 3.4 0.0 1.0
CB A:CYS37 3.5 0.0 1.0
CB A:HIS63 3.5 0.0 1.0
CB A:CYS40 3.6 0.0 1.0
HB3 A:HIS63 3.6 0.0 1.0
H A:CYS40 3.7 0.0 1.0
HB3 A:HIS42 3.8 0.0 1.0
HB3 A:CYS37 3.8 0.0 1.0
OG1 A:THR61 3.8 0.0 1.0
HG23 A:THR61 4.0 0.0 1.0
H A:HIS42 4.1 0.0 1.0
ND1 A:HIS57 4.2 0.0 1.0
NE2 A:HIS63 4.2 0.0 1.0
CG A:HIS57 4.2 0.0 1.0
CD2 A:HIS63 4.3 0.0 1.0
HG1 A:THR61 4.3 0.0 1.0
HB2 A:CYS40 4.3 0.0 1.0
HB A:THR61 4.3 0.0 1.0
HB2 A:HIS42 4.4 0.0 1.0
HB A:THR39 4.4 0.0 1.0
N A:CYS40 4.5 0.0 1.0
CB A:THR61 4.5 0.0 1.0
CB A:HIS42 4.6 0.0 1.0
CA A:CYS40 4.6 0.0 1.0
H A:CYS37 4.7 0.0 1.0
CG2 A:THR61 4.8 0.0 1.0
H A:GLY41 4.8 0.0 1.0
CA A:CYS37 4.9 0.0 1.0
O A:HIS42 4.9 0.0 1.0
N A:HIS42 4.9 0.0 1.0
CA A:HIS63 5.0 0.0 1.0

Reference:

A.Lemak, A.Yee, J.A.Lukin, M.Karra, A.Gutmanas, C.H.Arrowsmith. Solution Structure of RPA1320 To Be Published.
Page generated: Thu Oct 17 00:53:25 2024

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