Zinc in PDB 2h6e: Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus

All present enzymatic activity of Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus:
1.1.1.117;

The structure of Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus, PDB code: 2h6e was solved by S.J.J.Brouns, A.P.Turnbull, J.Akerboom, H.L.D.M.Willemen, W.M.De Vos, J.Van Der Oost, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.00 / 1.80
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	84.019, 84.019, 194.979, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.2

The binding sites of Zinc atom in the Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus (pdb code 2h6e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus, PDB code: 2h6e:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn400 b:56.4 occ:1.00 OD2 A:ASP150 1.8 39.0 1.0 NE2 A:HIS65 2.4 32.1 1.0 SG A:CYS41 2.4 28.2 1.0 CG A:ASP150 2.7 33.1 1.0 OD1 A:ASP150 3.1 38.3 1.0 CD2 A:HIS65 3.2 30.9 1.0 CB A:CYS41 3.2 20.7 1.0 CE1 A:HIS65 3.4 30.3 1.0 O A:HOH675 3.8 64.4 1.0 OG1 A:THR43 3.8 32.0 1.0 CB A:THR43 3.9 31.7 1.0 CB A:ASP150 4.0 26.6 1.0 O A:HOH667 4.1 40.7 1.0 NH1 A:ARG339 4.3 38.1 1.0 CG A:HIS65 4.4 26.2 1.0 ND1 A:HIS65 4.5 33.1 1.0 O A:HOH676 4.5 46.6 1.0 CA A:CYS41 4.6 24.6 1.0 CG2 A:THR43 4.8 30.8 1.0 N A:THR43 4.8 28.5 1.0 CA A:THR43 5.0 29.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:31.3 occ:1.00 OD1 A:ASP94 2.1 18.7 1.0 SG A:CYS100 2.3 24.4 1.0 SG A:CYS97 2.3 24.9 1.0 SG A:CYS108 2.3 25.4 1.0 CG A:ASP94 3.0 25.3 1.0 CB A:CYS108 3.2 27.3 1.0 CB A:CYS97 3.3 26.1 1.0 CB A:CYS100 3.4 23.6 1.0 OD2 A:ASP94 3.5 23.1 1.0 N A:ASP94 3.6 22.4 1.0 N A:CYS97 3.8 24.3 1.0 N A:LEU95 4.0 23.3 1.0 N A:CYS100 4.0 25.0 1.0 CA A:CYS108 4.1 25.8 1.0 CB A:ASP94 4.1 21.0 1.0 CA A:CYS97 4.1 22.9 1.0 O A:HOH509 4.2 22.7 1.0 CA A:ASP94 4.2 21.4 1.0 CA A:CYS100 4.3 24.1 1.0 O A:HOH503 4.3 27.6 1.0 N A:THR96 4.4 21.6 1.0 C A:ASP94 4.5 21.0 1.0 C A:GLY93 4.5 19.4 1.0 CA A:GLY93 4.5 25.2 1.0 C A:CYS97 4.7 23.6 1.0 O A:CYS97 4.8 23.2 1.0 CA A:LEU95 4.9 22.6 1.0 C A:LEU95 5.0 24.2 1.0 C A:CYS108 5.0 27.8 1.0 C A:THR96 5.0 21.3 1.0

S.J.Brouns, A.P.Turnbull, H.L.Willemen, J.Akerboom, J.Van Der Oost. Crystal Structure and Biochemical Properties of the D-Arabinose Dehydrogenase From Sulfolobus Solfataricus J.Mol.Biol. V. 371 1249 2007.
ISSN: ISSN 0022-2836
PubMed: 17610898
DOI: 10.1016/J.JMB.2007.05.097