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Zinc in PDB 2g64: Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase

Enzymatic activity of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase

All present enzymatic activity of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase:
4.2.3.12;

Protein crystallography data

The structure of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase, PDB code: 2g64 was solved by B.C.Wengerter, Y.Patskovsky, C.Zhan, U.Ramagopal, S.Milstein, M.Vidal, S.C.Almo, S.K.Burley, New York Sgx Research Center For Structuralgenomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 69.792, 69.792, 160.188, 90.00, 90.00, 120.00
R / Rfree (%) 16.1 / 21.9

Other elements in 2g64:

The structure of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase (pdb code 2g64). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase, PDB code: 2g64:

Zinc binding site 1 out of 1 in 2g64

Go back to Zinc Binding Sites List in 2g64
Zinc binding site 1 out of 1 in the Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:19.7
occ:0.80
 O A:HOH3139 1.8 26.1 1.0
NE2 A:HIS46 2.1 13.9 1.0
NE2 A:HIS19 2.1 16.8 1.0
NE2 A:HIS44 2.1 22.0 1.0
CD2 A:HIS46 3.0 11.0 1.0
CD2 A:HIS44 3.0 17.2 1.0
CE1 A:HIS19 3.1 16.1 1.0
CE1 A:HIS44 3.1 22.4 1.0
CD2 A:HIS19 3.2 14.0 1.0
CE1 A:HIS46 3.2 16.4 1.0
CG A:HIS46 4.2 12.6 1.0
CG A:HIS44 4.2 16.8 1.0
ND1 A:HIS19 4.2 10.7 1.0
ND1 A:HIS44 4.2 15.8 1.0
ND1 A:HIS46 4.2 14.9 1.0
CG A:HIS19 4.3 12.9 1.0
O A:HOH3168 4.5 34.8 1.0
SG A:CYS38 4.5 28.0 1.0
CD A:GLU129 4.6 30.8 1.0
OE2 A:GLU129 4.7 26.3 1.0
OH A:TYR48 4.7 14.6 1.0
O A:HOH3145 4.8 32.5 1.0
CG A:GLU129 4.8 25.1 1.0
O A:HOH3006 4.8 14.5 1.0
OE1 A:GLU129 5.0 29.1 1.0

Reference:

B.C.Wengerter, Y.Patskovsky, C.Zhan, U.Ramagopal, S.Milstein, M.Vidal, S.C.Almo. Crystal Structure of Caenorhabditis Elegans 6-Pyruvoyl Tetrahydropterin Synthase To Be Published.
Page generated: Thu Oct 17 00:01:46 2024

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