Zinc in PDB 2ecl: Solution Structure of the Ring Domain of the Human Ring-Box Protein 2

The binding sites of Zinc atom in the Solution Structure of the Ring Domain of the Human Ring-Box Protein 2 (pdb code 2ecl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Solution Structure of the Ring Domain of the Human Ring-Box Protein 2, PDB code: 2ecl:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Solution Structure of the Ring Domain of the Human Ring-Box Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Ring Domain of the Human Ring-Box Protein 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS53 2.0 0.0 1.0 SG A:CYS21 2.2 0.0 1.0 SG A:CYS18 2.3 0.0 1.0 SG A:CYS56 2.4 0.0 1.0 HB2 A:HIS53 2.6 0.0 1.0 CG A:HIS53 3.0 0.0 1.0 CE1 A:HIS53 3.0 0.0 1.0 HB3 A:CYS18 3.1 0.0 1.0 HB3 A:CYS29 3.1 0.0 1.0 HB3 A:CYS21 3.2 0.0 1.0 H A:CYS21 3.2 0.0 1.0 CB A:CYS18 3.3 0.0 1.0 CB A:HIS53 3.3 0.0 1.0 HE1 A:HIS53 3.3 0.0 1.0 HB A:ILE20 3.3 0.0 1.0 CB A:CYS21 3.3 0.0 1.0 HB2 A:CYS56 3.4 0.0 1.0 CB A:CYS56 3.5 0.0 1.0 HB2 A:CYS18 3.6 0.0 1.0 HB3 A:CYS56 3.7 0.0 1.0 N A:CYS21 3.8 0.0 1.0 HB3 A:HIS53 3.8 0.0 1.0 HB2 A:CYS29 3.9 0.0 1.0 HB A:VAL23 4.0 0.0 1.0 CB A:CYS29 4.0 0.0 1.0 H A:HIS53 4.0 0.0 1.0 HD13 A:ILE20 4.1 0.0 1.0 NE2 A:HIS53 4.1 0.0 1.0 CD2 A:HIS53 4.1 0.0 1.0 CA A:CYS21 4.2 0.0 1.0 HB2 A:CYS21 4.2 0.0 1.0 H A:VAL23 4.2 0.0 1.0 HG23 A:ILE20 4.4 0.0 1.0 CB A:ILE20 4.4 0.0 1.0 CA A:HIS53 4.5 0.0 1.0 N A:HIS53 4.6 0.0 1.0 H A:ARG22 4.6 0.0 1.0 CA A:CYS18 4.6 0.0 1.0 H A:CYS56 4.7 0.0 1.0 O A:CYS18 4.7 0.0 1.0 HA A:CYS29 4.7 0.0 1.0 C A:ILE20 4.8 0.0 1.0 CA A:CYS56 4.9 0.0 1.0 C A:CYS21 4.9 0.0 1.0 C A:CYS18 4.9 0.0 1.0 CG2 A:ILE20 4.9 0.0 1.0 O A:VAL23 4.9 0.0 1.0 H A:ILE20 5.0 0.0 1.0 CB A:VAL23 5.0 0.0 1.0 HG23 A:VAL23 5.0 0.0 1.0 N A:ARG22 5.0 0.0 1.0 CA A:CYS29 5.0 0.0 1.0

Zinc binding site 2 out of 3 in the Solution Structure of the Ring Domain of the Human Ring-Box Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Ring Domain of the Human Ring-Box Protein 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS55 2.2 0.0 1.0 SG A:CYS29 2.3 0.0 1.0 SG A:CYS41 2.3 0.0 1.0 SG A:CYS32 2.3 0.0 1.0 H A:CYS29 2.9 0.0 1.0 HB2 A:CYS32 2.9 0.0 1.0 CB A:CYS32 3.2 0.0 1.0 HB2 A:CYS41 3.3 0.0 1.0 CB A:CYS41 3.4 0.0 1.0 HB3 A:CYS29 3.5 0.0 1.0 CB A:CYS29 3.5 0.0 1.0 CB A:CYS55 3.5 0.0 1.0 HB3 A:CYS55 3.6 0.0 1.0 HB3 A:HIS53 3.7 0.0 1.0 N A:CYS29 3.8 0.0 1.0 HB2 A:CYS55 3.8 0.0 1.0 HA A:CYS41 3.8 0.0 1.0 H A:CYS32 3.8 0.0 1.0 HB3 A:CYS32 4.0 0.0 1.0 HB2 A:ARG31 4.2 0.0 1.0 CA A:CYS41 4.2 0.0 1.0 CA A:CYS29 4.2 0.0 1.0 N A:CYS32 4.2 0.0 1.0 HB3 A:CYS41 4.3 0.0 1.0 CA A:CYS32 4.3 0.0 1.0 HB2 A:CYS29 4.4 0.0 1.0 HA A:ALA28 4.4 0.0 1.0 H A:CYS55 4.5 0.0 1.0 HB2 A:ALA28 4.5 0.0 1.0 H A:CYS56 4.6 0.0 1.0 CB A:HIS53 4.6 0.0 1.0 CG A:HIS53 4.7 0.0 1.0 HA A:CYS32 4.8 0.0 1.0 CA A:CYS55 4.8 0.0 1.0 C A:ALA28 4.9 0.0 1.0 H A:ARG31 4.9 0.0 1.0 HD22 A:ASN54 4.9 0.0 1.0 SG A:CYS56 4.9 0.0 1.0 C A:CYS29 5.0 0.0 1.0 CD2 A:HIS53 5.0 0.0 1.0

Zinc binding site 3 out of 3 in the Solution Structure of the Ring Domain of the Human Ring-Box Protein 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Ring Domain of the Human Ring-Box Protein 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:0.0 occ:1.00 ND1 A:HIS50 1.9 0.0 1.0 SG A:CYS70 2.2 0.0 1.0 SG A:CYS48 2.4 0.0 1.0 SG A:CYS67 2.4 0.0 1.0 CE1 A:HIS50 2.7 0.0 1.0 HE1 A:HIS50 2.9 0.0 1.0 HB2 A:CYS48 2.9 0.0 1.0 CG A:HIS50 3.0 0.0 1.0 HB2 A:LEU69 3.0 0.0 1.0 HB2 A:HIS50 3.0 0.0 1.0 HB3 A:CYS67 3.1 0.0 1.0 H A:CYS70 3.1 0.0 1.0 CB A:CYS48 3.2 0.0 1.0 CB A:CYS67 3.2 0.0 1.0 HB2 A:CYS67 3.5 0.0 1.0 CB A:HIS50 3.5 0.0 1.0 HB3 A:CYS70 3.5 0.0 1.0 CB A:CYS70 3.5 0.0 1.0 HB3 A:CYS48 3.7 0.0 1.0 N A:CYS70 3.7 0.0 1.0 HE2 A:PHE52 3.8 0.0 1.0 NE2 A:HIS50 3.8 0.0 1.0 HB3 A:HIS50 3.9 0.0 1.0 CB A:LEU69 4.0 0.0 1.0 CD2 A:HIS50 4.0 0.0 1.0 HB3 A:LEU69 4.1 0.0 1.0 H A:LEU69 4.2 0.0 1.0 CA A:CYS70 4.2 0.0 1.0 HZ A:PHE52 4.3 0.0 1.0 HB2 A:CYS70 4.3 0.0 1.0 HZ3 A:TRP74 4.4 0.0 1.0 HD11 A:LEU69 4.4 0.0 1.0 HB2 A:GLN72 4.4 0.0 1.0 O A:CYS48 4.5 0.0 1.0 C A:LEU69 4.5 0.0 1.0 CA A:CYS48 4.6 0.0 1.0 H A:GLN72 4.7 0.0 1.0 CA A:LEU69 4.7 0.0 1.0 HD12 A:LEU69 4.7 0.0 1.0 HE2 A:HIS50 4.7 0.0 1.0 HE3 A:TRP74 4.7 0.0 1.0 CA A:CYS67 4.7 0.0 1.0 C A:CYS48 4.7 0.0 1.0 CE2 A:PHE52 4.7 0.0 1.0 N A:LEU69 4.8 0.0 1.0 CA A:HIS50 4.9 0.0 1.0 CD1 A:LEU69 4.9 0.0 1.0 CZ A:PHE52 5.0 0.0 1.0 CG A:LEU69 5.0 0.0 1.0 C A:CYS70 5.0 0.0 1.0 HD2 A:HIS50 5.0 0.0 1.0

K.Miyamoto, T.Tomizawa, S.Koshiba, S.Watanabe, T.Harada, T.Kigawa, S.Yokoyama. Solution Structure of the Ring Domain of the Human Ring-Box Protein 2 To Be Published.