Zinc in PDB 2dp8: Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution

The structure of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution, PDB code: 2dp8 was solved by N.Singh, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.082, 50.437, 65.790, 90.00, 107.53, 90.00
R / Rfree (%)	18.4 / 20

The structure of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution (pdb code 2dp8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution, PDB code: 2dp8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn692 b:32.2 occ:1.00 O A:HOH760 1.9 26.8 1.0 OE2 A:GLU659 2.2 30.4 1.0 OE1 A:GLU659 2.4 29.4 1.0 CD A:GLU659 2.6 29.9 1.0 CG A:GLU659 4.1 27.3 1.0 O A:HOH761 4.2 49.8 1.0 O A:ARG654 4.3 35.7 1.0 O A:GLY653 4.4 34.9 1.0 N A:THR656 4.9 29.3 1.0 CB A:GLU659 4.9 27.1 1.0

Zinc binding site 2 out of 2 in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn693 b:36.5 occ:1.00 O A:HOH846 1.8 26.0 1.0 O A:HOH849 1.9 48.2 1.0 NE2 A:HIS588 2.1 23.0 1.0 CE1 A:HIS588 2.9 23.9 1.0 CD2 A:HIS588 3.1 23.7 1.0 ND1 A:HIS588 4.1 24.9 1.0 CG A:HIS588 4.2 23.9 1.0 CG1 A:VAL591 4.7 27.2 1.0

N.Singh, S.Sharma, T.P.Singh. Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution To Be Published.