Zinc in PDB 2dkt: Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus

The binding sites of Zinc atom in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus (pdb code 2dkt). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus, PDB code: 2dkt:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn191 b:0.0 occ:1.00 ND1 A:HIS21 2.1 0.0 1.0 SG A:CYS39 2.2 0.0 1.0 SG A:CYS42 2.3 0.0 1.0 SG A:CYS19 2.3 0.0 1.0 HB2 A:HIS21 2.8 0.0 1.0 CE1 A:HIS21 3.0 0.0 1.0 CG A:HIS21 3.1 0.0 1.0 HE1 A:HIS21 3.2 0.0 1.0 HB A:THR38 3.2 0.0 1.0 H A:CYS42 3.3 0.0 1.0 HB2 A:CYS19 3.4 0.0 1.0 H A:CYS39 3.4 0.0 1.0 CB A:CYS19 3.4 0.0 1.0 CB A:HIS21 3.5 0.0 1.0 HB3 A:CYS39 3.5 0.0 1.0 CB A:CYS42 3.5 0.0 1.0 CB A:CYS39 3.5 0.0 1.0 HB2 A:CYS42 3.6 0.0 1.0 HB2 A:LEU41 3.6 0.0 1.0 HB3 A:CYS19 3.7 0.0 1.0 N A:CYS42 3.8 0.0 1.0 H A:HIS21 3.8 0.0 1.0 HG22 A:THR38 3.9 0.0 1.0 N A:CYS39 4.0 0.0 1.0 CA A:CYS42 4.1 0.0 1.0 HA A:CYS42 4.1 0.0 1.0 NE2 A:HIS21 4.1 0.0 1.0 HB3 A:HIS21 4.1 0.0 1.0 CD2 A:HIS21 4.2 0.0 1.0 CB A:THR38 4.2 0.0 1.0 CA A:CYS39 4.3 0.0 1.0 H A:TYR22 4.3 0.0 1.0 HB2 A:CYS39 4.3 0.0 1.0 HB3 A:CYS42 4.4 0.0 1.0 CG2 A:THR38 4.6 0.0 1.0 N A:HIS21 4.6 0.0 1.0 HD2 A:TYR22 4.6 0.0 1.0 CB A:LEU41 4.6 0.0 1.0 CA A:HIS21 4.7 0.0 1.0 C A:LEU41 4.7 0.0 1.0 H A:LEU41 4.8 0.0 1.0 C A:CYS39 4.8 0.0 1.0 CA A:CYS19 4.8 0.0 1.0 HB3 A:LEU41 4.9 0.0 1.0 O A:CYS39 4.9 0.0 1.0 C A:THR38 4.9 0.0 1.0 OG1 A:THR38 4.9 0.0 1.0 HE2 A:HIS21 5.0 0.0 1.0 H A:CYS19 5.0 0.0 1.0

Zinc binding site 2 out of 6 in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn241 b:0.0 occ:1.00 NE2 A:HIS43 2.0 0.0 1.0 NE2 A:HIS49 2.1 0.0 1.0 SG A:CYS32 2.2 0.0 1.0 SG A:CYS33 2.2 0.0 1.0 CD2 A:HIS43 2.9 0.0 1.0 CE1 A:HIS49 2.9 0.0 1.0 CE1 A:HIS43 3.0 0.0 1.0 CD2 A:HIS49 3.1 0.0 1.0 HB3 A:CYS33 3.1 0.0 1.0 HD2 A:HIS43 3.1 0.0 1.0 H A:CYS33 3.2 0.0 1.0 HE1 A:HIS49 3.2 0.0 1.0 CB A:CYS33 3.3 0.0 1.0 HE1 A:HIS43 3.3 0.0 1.0 HB2 A:CYS32 3.3 0.0 1.0 HB2 A:ALA30 3.4 0.0 1.0 HD2 A:HIS49 3.4 0.0 1.0 CB A:CYS32 3.4 0.0 1.0 N A:CYS33 3.5 0.0 1.0 HB2 A:LEU51 3.7 0.0 1.0 HB1 A:ALA30 3.9 0.0 1.0 HG3 A:GLU47 3.9 0.0 1.0 CA A:CYS33 4.0 0.0 1.0 C A:CYS32 4.0 0.0 1.0 ND1 A:HIS49 4.0 0.0 1.0 ND1 A:HIS43 4.1 0.0 1.0 CG A:HIS43 4.1 0.0 1.0 CB A:ALA30 4.1 0.0 1.0 CG A:HIS49 4.1 0.0 1.0 HD13 A:LEU51 4.1 0.0 1.0 HB2 A:CYS33 4.2 0.0 1.0 CA A:CYS32 4.2 0.0 1.0 H A:CYS32 4.2 0.0 1.0 HB3 A:CYS32 4.2 0.0 1.0 OE2 A:GLU47 4.2 0.0 1.0 HB2 A:LYS35 4.4 0.0 1.0 HB3 A:ALA30 4.6 0.0 1.0 HB3 A:GLU47 4.7 0.0 1.0 N A:CYS32 4.7 0.0 1.0 HA A:CYS33 4.7 0.0 1.0 CG A:GLU47 4.7 0.0 1.0 CB A:LEU51 4.8 0.0 1.0 O A:CYS32 4.8 0.0 1.0 CD A:GLU47 4.8 0.0 1.0 H A:LYS35 4.9 0.0 1.0 HD1 A:HIS49 4.9 0.0 1.0 HA A:LEU51 4.9 0.0 1.0 HD1 A:HIS43 4.9 0.0 1.0 H A:ASP34 5.0 0.0 1.0 C A:CYS33 5.0 0.0 1.0

Zinc binding site 3 out of 6 in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn291 b:0.0 occ:1.00 SG A:CYS64 2.2 0.0 1.0 SG A:CYS77 2.3 0.0 1.0 SG A:CYS61 2.4 0.0 1.0 SG A:CYS74 2.4 0.0 1.0 H A:CYS64 2.9 0.0 1.0 HB2 A:ASN63 3.0 0.0 1.0 HB2 A:CYS74 3.1 0.0 1.0 CB A:CYS74 3.3 0.0 1.0 HB3 A:CYS61 3.3 0.0 1.0 CB A:CYS61 3.3 0.0 1.0 H A:CYS77 3.4 0.0 1.0 HB3 A:CYS77 3.4 0.0 1.0 HB3 A:CYS74 3.4 0.0 1.0 HB2 A:CYS61 3.5 0.0 1.0 CB A:CYS64 3.5 0.0 1.0 CB A:CYS77 3.5 0.0 1.0 HB3 A:CYS64 3.6 0.0 1.0 HB3 A:LYS66 3.6 0.0 1.0 N A:CYS64 3.6 0.0 1.0 HZ A:PHE81 3.7 0.0 1.0 HB3 A:ASP76 3.8 0.0 1.0 HE22 A:GLN68 3.8 0.0 1.0 HB A:THR79 3.9 0.0 1.0 N A:CYS77 4.0 0.0 1.0 CA A:CYS64 4.1 0.0 1.0 H A:LYS66 4.1 0.0 1.0 CB A:ASN63 4.1 0.0 1.0 H A:ASN63 4.1 0.0 1.0 H A:ASP76 4.2 0.0 1.0 H A:THR79 4.3 0.0 1.0 HB2 A:CYS77 4.3 0.0 1.0 CA A:CYS77 4.3 0.0 1.0 HB2 A:CYS64 4.4 0.0 1.0 HB3 A:ASN63 4.5 0.0 1.0 C A:ASN63 4.5 0.0 1.0 CB A:LYS66 4.6 0.0 1.0 HE1 A:PHE81 4.6 0.0 1.0 CZ A:PHE81 4.6 0.0 1.0 H A:SER78 4.6 0.0 1.0 HB2 A:LYS66 4.6 0.0 1.0 C A:CYS64 4.6 0.0 1.0 CA A:ASN63 4.7 0.0 1.0 CA A:CYS74 4.7 0.0 1.0 N A:ASN63 4.7 0.0 1.0 CB A:ASP76 4.7 0.0 1.0 CA A:CYS61 4.8 0.0 1.0 NE2 A:GLN68 4.8 0.0 1.0 HG1 A:THR79 4.9 0.0 1.0 H A:GLU65 4.9 0.0 1.0 HB2 A:ASP76 4.9 0.0 1.0 C A:ASP76 4.9 0.0 1.0 HA A:CYS74 4.9 0.0 1.0 CB A:THR79 4.9 0.0 1.0 N A:LYS66 4.9 0.0 1.0 H A:GLU75 4.9 0.0 1.0 N A:GLU65 5.0 0.0 1.0

Zinc binding site 4 out of 6 in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn341 b:0.0 occ:1.00 ND1 A:HIS100 2.0 0.0 1.0 SG A:CYS107 2.2 0.0 1.0 SG A:CYS89 2.4 0.0 1.0 SG A:CYS86 2.4 0.0 1.0 CE1 A:HIS100 2.7 0.0 1.0 HE1 A:HIS100 2.7 0.0 1.0 HB2 A:CYS89 3.0 0.0 1.0 H A:CYS107 3.2 0.0 1.0 CG A:HIS100 3.2 0.0 1.0 N A:CYS107 3.3 0.0 1.0 CB A:CYS89 3.3 0.0 1.0 HB2 A:HIS100 3.4 0.0 1.0 H A:CYS89 3.4 0.0 1.0 HB2 A:CYS86 3.5 0.0 1.0 CB A:CYS86 3.5 0.0 1.0 CB A:CYS107 3.5 0.0 1.0 HA A:CYS107 3.6 0.0 1.0 HA A:ILE106 3.6 0.0 1.0 CA A:CYS107 3.7 0.0 1.0 HB3 A:CYS86 3.8 0.0 1.0 C A:ILE106 3.8 0.0 1.0 CB A:HIS100 3.9 0.0 1.0 NE2 A:HIS100 3.9 0.0 1.0 HB A:ILE88 4.0 0.0 1.0 HB3 A:CYS89 4.1 0.0 1.0 N A:CYS89 4.1 0.0 1.0 CD2 A:HIS100 4.2 0.0 1.0 HB3 A:CYS107 4.2 0.0 1.0 HB2 A:CYS107 4.2 0.0 1.0 CA A:ILE106 4.2 0.0 1.0 HE2 A:TYR84 4.3 0.0 1.0 CA A:CYS89 4.4 0.0 1.0 HA A:HIS100 4.4 0.0 1.0 O A:ILE106 4.4 0.0 1.0 O A:GLY105 4.5 0.0 1.0 HD11 A:ILE88 4.6 0.0 1.0 HB3 A:HIS100 4.7 0.0 1.0 HE2 A:HIS100 4.7 0.0 1.0 HD21 A:LEU91 4.7 0.0 1.0 HB3 A:LEU91 4.7 0.0 1.0 CA A:HIS100 4.8 0.0 1.0 N A:ILE106 4.8 0.0 1.0 HH22 A:ARG53 4.8 0.0 1.0 CA A:CYS86 4.9 0.0 1.0 HH21 A:ARG53 4.9 0.0 1.0 C A:GLY105 4.9 0.0 1.0 H A:ILE88 5.0 0.0 1.0

Zinc binding site 5 out of 6 in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn391 b:0.0 occ:1.00 ND1 A:HIS117 2.1 0.0 1.0 SG A:CYS124 2.2 0.0 1.0 SG A:CYS104 2.3 0.0 1.0 SG A:CYS101 2.4 0.0 1.0 CE1 A:HIS117 2.8 0.0 1.0 HE1 A:HIS117 2.8 0.0 1.0 CG A:HIS117 3.3 0.0 1.0 HB2 A:HIS117 3.3 0.0 1.0 HB2 A:CYS104 3.3 0.0 1.0 N A:CYS124 3.4 0.0 1.0 CB A:CYS101 3.5 0.0 1.0 HB2 A:SER103 3.5 0.0 1.0 CB A:CYS104 3.5 0.0 1.0 HB3 A:CYS101 3.5 0.0 1.0 HA A:CYS124 3.5 0.0 1.0 CB A:CYS124 3.5 0.0 1.0 H A:CYS124 3.5 0.0 1.0 HB2 A:CYS101 3.6 0.0 1.0 H A:CYS104 3.6 0.0 1.0 CA A:CYS124 3.7 0.0 1.0 HA A:LEU123 3.8 0.0 1.0 C A:LEU123 3.8 0.0 1.0 CB A:HIS117 3.9 0.0 1.0 NE2 A:HIS117 4.0 0.0 1.0 HB2 A:CYS124 4.0 0.0 1.0 N A:CYS104 4.0 0.0 1.0 CD2 A:HIS117 4.2 0.0 1.0 O A:LEU123 4.3 0.0 1.0 HB3 A:CYS104 4.3 0.0 1.0 HB3 A:CYS124 4.3 0.0 1.0 CA A:LEU123 4.3 0.0 1.0 CA A:CYS104 4.4 0.0 1.0 CB A:SER103 4.4 0.0 1.0 HA A:HIS117 4.5 0.0 1.0 HB3 A:SER103 4.5 0.0 1.0 HG3 A:ARG108 4.5 0.0 1.0 HB3 A:HIS117 4.7 0.0 1.0 C A:SER103 4.8 0.0 1.0 HE2 A:HIS117 4.8 0.0 1.0 HA A:CYS104 4.8 0.0 1.0 CA A:HIS117 4.8 0.0 1.0 CA A:CYS101 4.9 0.0 1.0 H A:SER103 4.9 0.0 1.0

Zinc binding site 6 out of 6 in the Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn441 b:0.0 occ:1.00 NE2 A:HIS133 2.1 0.0 1.0 SG A:CYS118 2.3 0.0 1.0 SG A:CYS135 2.3 0.0 1.0 SG A:CYS121 2.4 0.0 1.0 CD2 A:HIS133 2.9 0.0 1.0 HD2 A:HIS133 3.0 0.0 1.0 HB3 A:CYS135 3.1 0.0 1.0 CE1 A:HIS133 3.2 0.0 1.0 HB2 A:CYS121 3.3 0.0 1.0 CB A:CYS135 3.3 0.0 1.0 H A:CYS121 3.3 0.0 1.0 CB A:CYS118 3.4 0.0 1.0 HB3 A:CYS118 3.4 0.0 1.0 CB A:CYS121 3.5 0.0 1.0 HB2 A:CYS118 3.6 0.0 1.0 HE1 A:HIS133 3.6 0.0 1.0 HB2 A:LYS120 3.7 0.0 1.0 HA A:CYS135 3.8 0.0 1.0 N A:CYS121 4.0 0.0 1.0 CA A:CYS135 4.0 0.0 1.0 CG A:HIS133 4.1 0.0 1.0 HD11 A:LEU125 4.2 0.0 1.0 HB2 A:CYS135 4.2 0.0 1.0 ND1 A:HIS133 4.2 0.0 1.0 HB3 A:CYS121 4.3 0.0 1.0 CA A:CYS121 4.3 0.0 1.0 N A:CYS135 4.3 0.0 1.0 O A:LYS134 4.4 0.0 1.0 C A:LYS134 4.5 0.0 1.0 CB A:LYS120 4.6 0.0 1.0 HB3 A:LYS120 4.7 0.0 1.0 HA A:CYS121 4.7 0.0 1.0 HD12 A:LEU125 4.7 0.0 1.0 CA A:CYS118 4.8 0.0 1.0 H A:CYS135 4.8 0.0 1.0 CD1 A:LEU125 4.8 0.0 1.0 O A:HIS133 4.9 0.0 1.0 HD13 A:LEU125 4.9 0.0 1.0 C A:LYS120 4.9 0.0 1.0

K.Miyamoto, T.Kigawa, S.Koshiba, M.Inoue, S.Yokoyama. Solution Structure of the Chy Zinc Finger Domain of the Ring Finger and Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus To Be Published.