Atomistry » Zinc » PDB 2db6-2drp » 2did
Atomistry »
  Zinc »
    PDB 2db6-2drp »
      2did »

Zinc in PDB 2did: One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39

Zinc Binding Sites:

The binding sites of Zinc atom in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 (pdb code 2did). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39, PDB code: 2did:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2did

Go back to Zinc Binding Sites List in 2did
Zinc binding site 1 out of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS14 1.9 0.0 1.0
SG A:CYS30 2.2 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS11 2.4 0.0 1.0
CE1 A:HIS14 2.7 0.0 1.0
HB2 A:HIS14 2.9 0.0 1.0
H A:CYS33 2.9 0.0 1.0
HE1 A:HIS14 3.0 0.0 1.0
CG A:HIS14 3.0 0.0 1.0
H A:CYS30 3.3 0.0 1.0
HB2 A:CYS11 3.4 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
HB3 A:CYS30 3.4 0.0 1.0
HB2 A:CYS33 3.5 0.0 1.0
CB A:CYS30 3.5 0.0 1.0
CB A:HIS14 3.5 0.0 1.0
CB A:CYS33 3.5 0.0 1.0
HB A:ILE32 3.5 0.0 1.0
HB3 A:CYS11 3.6 0.0 1.0
N A:CYS33 3.8 0.0 1.0
NE2 A:HIS14 3.8 0.0 1.0
H A:HIS14 3.9 0.0 1.0
N A:CYS30 3.9 0.0 1.0
CD2 A:HIS14 3.9 0.0 1.0
CA A:CYS33 4.1 0.0 1.0
HB3 A:HIS14 4.2 0.0 1.0
CA A:CYS30 4.2 0.0 1.0
HB2 A:CYS30 4.3 0.0 1.0
HA A:CYS33 4.3 0.0 1.0
HG12 A:ILE32 4.3 0.0 1.0
HB3 A:GLN13 4.4 0.0 1.0
HB3 A:CYS33 4.4 0.0 1.0
N A:HIS14 4.4 0.0 1.0
CB A:ILE32 4.5 0.0 1.0
HA A:VAL29 4.5 0.0 1.0
HB A:VAL29 4.6 0.0 1.0
CA A:HIS14 4.6 0.0 1.0
HE2 A:HIS14 4.7 0.0 1.0
C A:CYS30 4.7 0.0 1.0
H A:ILE32 4.8 0.0 1.0
HD22 A:LEU18 4.8 0.0 1.0
CA A:CYS11 4.8 0.0 1.0
O A:CYS30 4.8 0.0 1.0
H A:GLN13 4.9 0.0 1.0
C A:ILE32 4.9 0.0 1.0
C A:VAL29 4.9 0.0 1.0
HD2 A:PRO12 4.9 0.0 1.0
HD2 A:HIS14 4.9 0.0 1.0
CG1 A:ILE32 4.9 0.0 1.0
HB2 A:GLU16 5.0 0.0 1.0
HA A:CYS11 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2did

Go back to Zinc Binding Sites List in 2did
Zinc binding site 2 out of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS39 1.9 0.0 1.0
ND1 A:HIS42 1.9 0.0 1.0
OD1 A:ASP25 1.9 0.0 1.0
SG A:CYS22 2.2 0.0 1.0
CG A:ASP25 2.7 0.0 1.0
CE1 A:HIS39 2.8 0.0 1.0
CE1 A:HIS42 2.9 0.0 1.0
CG A:HIS42 2.9 0.0 1.0
HB3 A:HIS39 2.9 0.0 1.0
HB3 A:HIS42 3.0 0.0 1.0
CG A:HIS39 3.0 0.0 1.0
HE1 A:HIS39 3.0 0.0 1.0
HE1 A:HIS42 3.1 0.0 1.0
OD2 A:ASP25 3.3 0.0 1.0
CB A:HIS42 3.3 0.0 1.0
HB2 A:HIS42 3.4 0.0 1.0
H A:ASP25 3.4 0.0 1.0
CB A:HIS39 3.4 0.0 1.0
CB A:CYS22 3.4 0.0 1.0
HA A:HIS39 3.4 0.0 1.0
HB2 A:ASP25 3.5 0.0 1.0
HB2 A:CYS22 3.5 0.0 1.0
HB3 A:CYS22 3.7 0.0 1.0
CB A:ASP25 3.7 0.0 1.0
HB3 A:GLU24 3.9 0.0 1.0
NE2 A:HIS39 4.0 0.0 1.0
CA A:HIS39 4.0 0.0 1.0
NE2 A:HIS42 4.0 0.0 1.0
CD2 A:HIS42 4.0 0.0 1.0
CD2 A:HIS39 4.1 0.0 1.0
N A:ASP25 4.2 0.0 1.0
HB2 A:HIS39 4.4 0.0 1.0
HB3 A:ASP25 4.5 0.0 1.0
CA A:ASP25 4.6 0.0 1.0
HG21 A:THR38 4.7 0.0 1.0
HG21 A:VAL44 4.8 0.0 1.0
CA A:HIS42 4.8 0.0 1.0
O A:THR38 4.8 0.0 1.0
CA A:CYS22 4.8 0.0 1.0
N A:HIS39 4.8 0.0 1.0
HE2 A:HIS39 4.8 0.0 1.0
HE2 A:HIS42 4.9 0.0 1.0
CB A:GLU24 4.9 0.0 1.0
HA A:CYS22 4.9 0.0 1.0
HG13 A:VAL29 5.0 0.0 1.0

Reference:

T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 To Be Published.
Page generated: Wed Oct 16 22:43:39 2024

Last articles

Mg in 4P0G
Mg in 4P0P
Mg in 4P02
Mg in 4P00
Mg in 4OYN
Mg in 4OZ6
Mg in 4OWU
Mg in 4OXD
Mg in 4OWQ
Mg in 4OWO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy