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Zinc in PDB 2did: One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39

Zinc Binding Sites:

The binding sites of Zinc atom in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 (pdb code 2did). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39, PDB code: 2did:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2did

Go back to Zinc Binding Sites List in 2did
Zinc binding site 1 out of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS14 1.9 0.0 1.0
SG A:CYS30 2.2 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS11 2.4 0.0 1.0
CE1 A:HIS14 2.7 0.0 1.0
HB2 A:HIS14 2.9 0.0 1.0
H A:CYS33 2.9 0.0 1.0
HE1 A:HIS14 3.0 0.0 1.0
CG A:HIS14 3.0 0.0 1.0
H A:CYS30 3.3 0.0 1.0
HB2 A:CYS11 3.4 0.0 1.0
CB A:CYS11 3.4 0.0 1.0
HB3 A:CYS30 3.4 0.0 1.0
HB2 A:CYS33 3.5 0.0 1.0
CB A:CYS30 3.5 0.0 1.0
CB A:HIS14 3.5 0.0 1.0
CB A:CYS33 3.5 0.0 1.0
HB A:ILE32 3.5 0.0 1.0
HB3 A:CYS11 3.6 0.0 1.0
N A:CYS33 3.8 0.0 1.0
NE2 A:HIS14 3.8 0.0 1.0
H A:HIS14 3.9 0.0 1.0
N A:CYS30 3.9 0.0 1.0
CD2 A:HIS14 3.9 0.0 1.0
CA A:CYS33 4.1 0.0 1.0
HB3 A:HIS14 4.2 0.0 1.0
CA A:CYS30 4.2 0.0 1.0
HB2 A:CYS30 4.3 0.0 1.0
HA A:CYS33 4.3 0.0 1.0
HG12 A:ILE32 4.3 0.0 1.0
HB3 A:GLN13 4.4 0.0 1.0
HB3 A:CYS33 4.4 0.0 1.0
N A:HIS14 4.4 0.0 1.0
CB A:ILE32 4.5 0.0 1.0
HA A:VAL29 4.5 0.0 1.0
HB A:VAL29 4.6 0.0 1.0
CA A:HIS14 4.6 0.0 1.0
HE2 A:HIS14 4.7 0.0 1.0
C A:CYS30 4.7 0.0 1.0
H A:ILE32 4.8 0.0 1.0
HD22 A:LEU18 4.8 0.0 1.0
CA A:CYS11 4.8 0.0 1.0
O A:CYS30 4.8 0.0 1.0
H A:GLN13 4.9 0.0 1.0
C A:ILE32 4.9 0.0 1.0
C A:VAL29 4.9 0.0 1.0
HD2 A:PRO12 4.9 0.0 1.0
HD2 A:HIS14 4.9 0.0 1.0
CG1 A:ILE32 4.9 0.0 1.0
HB2 A:GLU16 5.0 0.0 1.0
HA A:CYS11 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2did

Go back to Zinc Binding Sites List in 2did
Zinc binding site 2 out of 2 in the One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS39 1.9 0.0 1.0
ND1 A:HIS42 1.9 0.0 1.0
OD1 A:ASP25 1.9 0.0 1.0
SG A:CYS22 2.2 0.0 1.0
CG A:ASP25 2.7 0.0 1.0
CE1 A:HIS39 2.8 0.0 1.0
CE1 A:HIS42 2.9 0.0 1.0
CG A:HIS42 2.9 0.0 1.0
HB3 A:HIS39 2.9 0.0 1.0
HB3 A:HIS42 3.0 0.0 1.0
CG A:HIS39 3.0 0.0 1.0
HE1 A:HIS39 3.0 0.0 1.0
HE1 A:HIS42 3.1 0.0 1.0
OD2 A:ASP25 3.3 0.0 1.0
CB A:HIS42 3.3 0.0 1.0
HB2 A:HIS42 3.4 0.0 1.0
H A:ASP25 3.4 0.0 1.0
CB A:HIS39 3.4 0.0 1.0
CB A:CYS22 3.4 0.0 1.0
HA A:HIS39 3.4 0.0 1.0
HB2 A:ASP25 3.5 0.0 1.0
HB2 A:CYS22 3.5 0.0 1.0
HB3 A:CYS22 3.7 0.0 1.0
CB A:ASP25 3.7 0.0 1.0
HB3 A:GLU24 3.9 0.0 1.0
NE2 A:HIS39 4.0 0.0 1.0
CA A:HIS39 4.0 0.0 1.0
NE2 A:HIS42 4.0 0.0 1.0
CD2 A:HIS42 4.0 0.0 1.0
CD2 A:HIS39 4.1 0.0 1.0
N A:ASP25 4.2 0.0 1.0
HB2 A:HIS39 4.4 0.0 1.0
HB3 A:ASP25 4.5 0.0 1.0
CA A:ASP25 4.6 0.0 1.0
HG21 A:THR38 4.7 0.0 1.0
HG21 A:VAL44 4.8 0.0 1.0
CA A:HIS42 4.8 0.0 1.0
O A:THR38 4.8 0.0 1.0
CA A:CYS22 4.8 0.0 1.0
N A:HIS39 4.8 0.0 1.0
HE2 A:HIS39 4.8 0.0 1.0
HE2 A:HIS42 4.9 0.0 1.0
CB A:GLU24 4.9 0.0 1.0
HA A:CYS22 4.9 0.0 1.0
HG13 A:VAL29 5.0 0.0 1.0

Reference:

T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. One Sequence Two Fold ? : Correct Fold of the Zf-B-Box Domain From Human Tripartite Motif Protein 39 To Be Published.
Page generated: Wed Oct 16 22:43:39 2024

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