Zinc in PDB 2cqf: Solution Structure of the Zinc-Finger Domain in Lin-28

The binding sites of Zinc atom in the Solution Structure of the Zinc-Finger Domain in Lin-28 (pdb code 2cqf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Zinc-Finger Domain in Lin-28, PDB code: 2cqf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Zinc-Finger Domain in Lin-28


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zinc-Finger Domain in Lin-28 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn330 b:0.0 occ:1.00 SG A:CYS152 2.3 0.0 1.0 SG A:CYS142 2.3 0.0 1.0 SG A:CYS139 2.3 0.0 1.0 NE2 A:HIS147 2.4 0.0 1.0 HB2 A:CYS152 3.0 0.0 1.0 H A:CYS142 3.1 0.0 1.0 HB3 A:CYS139 3.2 0.0 1.0 CB A:CYS152 3.3 0.0 1.0 CB A:CYS139 3.3 0.0 1.0 CE1 A:HIS147 3.3 0.0 1.0 H A:GLY144 3.3 0.0 1.0 CD2 A:HIS147 3.4 0.0 1.0 HB2 A:CYS139 3.4 0.0 1.0 HB3 A:CYS142 3.4 0.0 1.0 HB3 A:ASN141 3.5 0.0 1.0 H A:GLY143 3.5 0.0 1.0 HE1 A:HIS147 3.5 0.0 1.0 CB A:CYS142 3.5 0.0 1.0 HD2 A:HIS147 3.6 0.0 1.0 HD13 A:LEU154 3.6 0.0 1.0 HB3 A:CYS152 3.8 0.0 1.0 N A:CYS142 3.9 0.0 1.0 HA A:ALA149 3.9 0.0 1.0 HA3 A:GLY144 3.9 0.0 1.0 N A:GLY144 4.2 0.0 1.0 HD21 A:ASN141 4.2 0.0 1.0 CA A:CYS142 4.2 0.0 1.0 N A:GLY143 4.3 0.0 1.0 HB2 A:CYS142 4.4 0.0 1.0 ND1 A:HIS147 4.4 0.0 1.0 HA A:CYS152 4.5 0.0 1.0 CG A:HIS147 4.5 0.0 1.0 CA A:CYS152 4.5 0.0 1.0 CB A:ASN141 4.5 0.0 1.0 HB2 A:LEU154 4.6 0.0 1.0 H A:ASN141 4.6 0.0 1.0 CA A:GLY144 4.6 0.0 1.0 CD1 A:LEU154 4.7 0.0 1.0 CA A:CYS139 4.7 0.0 1.0 C A:CYS142 4.7 0.0 1.0 C A:ASN141 4.9 0.0 1.0 HB2 A:ASN141 4.9 0.0 1.0 CA A:ALA149 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Zinc-Finger Domain in Lin-28


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zinc-Finger Domain in Lin-28 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn530 b:0.0 occ:1.00 SG A:CYS161 2.3 0.0 1.0 SG A:CYS164 2.3 0.0 1.0 SG A:CYS174 2.3 0.0 1.0 NE2 A:HIS169 2.3 0.0 1.0 H A:CYS164 2.9 0.0 1.0 HB2 A:CYS174 2.9 0.0 1.0 HB3 A:PHE163 2.9 0.0 1.0 HB3 A:SER166 3.0 0.0 1.0 HD2 A:PHE163 3.2 0.0 1.0 CB A:CYS174 3.2 0.0 1.0 CE1 A:HIS169 3.3 0.0 1.0 CD2 A:HIS169 3.3 0.0 1.0 HE1 A:HIS169 3.5 0.0 1.0 HD2 A:HIS169 3.5 0.0 1.0 CB A:CYS161 3.5 0.0 1.0 CB A:CYS164 3.5 0.0 1.0 HB3 A:CYS164 3.5 0.0 1.0 HB3 A:CYS161 3.5 0.0 1.0 N A:CYS164 3.6 0.0 1.0 HB2 A:CYS161 3.7 0.0 1.0 H A:SER166 3.9 0.0 1.0 CB A:SER166 3.9 0.0 1.0 HD13 A:LEU176 4.0 0.0 1.0 HB3 A:CYS174 4.0 0.0 1.0 CB A:PHE163 4.0 0.0 1.0 HB2 A:SER166 4.0 0.0 1.0 CA A:CYS164 4.1 0.0 1.0 HA A:CYS174 4.1 0.0 1.0 HA A:VAL171 4.2 0.0 1.0 CD2 A:PHE163 4.2 0.0 1.0 H A:PHE163 4.3 0.0 1.0 CA A:CYS174 4.3 0.0 1.0 HG A:SER166 4.4 0.0 1.0 HB2 A:CYS164 4.4 0.0 1.0 ND1 A:HIS169 4.4 0.0 1.0 O A:MET170 4.4 0.0 1.0 CG A:HIS169 4.5 0.0 1.0 HD2 A:PRO175 4.5 0.0 1.0 C A:PHE163 4.5 0.0 1.0 HB2 A:PHE163 4.6 0.0 1.0 HB2 A:LEU176 4.6 0.0 1.0 CG A:PHE163 4.6 0.0 1.0 C A:CYS164 4.6 0.0 1.0 OG A:SER166 4.7 0.0 1.0 N A:SER166 4.7 0.0 1.0 CA A:PHE163 4.7 0.0 1.0 N A:PHE163 4.9 0.0 1.0 CA A:CYS161 4.9 0.0 1.0 CA A:SER166 5.0 0.0 1.0 H A:GLN165 5.0 0.0 1.0

T.Someya, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama. Solution Structure of the Zinc-Finger Domain in Lin-28 To Be Published.