Zinc in PDB, part 558 (files: 22281-22320),
PDB 9fpy-9g23
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 22281-22320 (PDB 9fpy-9g23).
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9fpy (Zn: 4) - Structure of the Complete Vaccinia Dna-Dependent Rna Polymerase Complex Assembly Intermediate 3
Other atoms:
Mg (4);
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9fra (Zn: 8) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Ss-Map Leaderless Mrna
Other atoms:
Mg (58);
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9frk (Zn: 8) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Sd Mrna
Other atoms:
Mg (59);
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9frl (Zn: 8) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Sd Mrna with H44 in Up Position
Other atoms:
Mg (53);
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9fs1 (Zn: 4) - Mutant S1538L of the Dihydroorotase Domain of Human Cad Protein Bound to Carbamoyl Aspartate
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9fs2 (Zn: 4) - Mutant S1538A of the Dihydroorotase Domain of Human Cad Protein Bound to Substrate
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9fs3 (Zn: 4) - Mutant S1538L of the Dihydroorotase Domain of Human Cad Protein Bound to Carbamoyl Aspartate
Other atoms:
Na (1);
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9fs6 (Zn: 9) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Ss-AIF2BETA Leaderless Mrna with H44 in Up Position
Other atoms:
Mg (57);
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9fs8 (Zn: 9) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Ss-AEF1A-Like Mrna
Other atoms:
Mg (57);
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9fsf (Zn: 8) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Ss-Map Leaderless Mrna with H44 in Up Position
Other atoms:
Mg (56);
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9fso (Zn: 9) - Human Rna Polymerase III Class III Open Pre-Initiation Complex 1 (OC1)
Other atoms:
Mg (1);
Fe (4);
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9fsp (Zn: 9) - Rna Polymerase III Class III Open Pre-Initation Complex 2 (OC2)
Other atoms:
Fe (4);
Mg (1);
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9fsq (Zn: 9) - Rna Polymerase III Class III Melting Pre-Initiation Complex (Mc)
Other atoms:
Fe (4);
Mg (1);
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9fsr (Zn: 9) - Rna Polymerase III Class III Open Mini Pre-Initiation Complex 1 (OC1- Mini)
Other atoms:
Fe (4);
Mg (1);
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9fss (Zn: 9) - Rna Polymerase III Class III Open Mini Pre-Initiation Complex 2 (OC2- Mini)
Other atoms:
Fe (4);
Mg (1);
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9fux (Zn: 2) - Cryo-Em Structure of the Nipah Virus Polymerase (L) Bound to the Tetrameric Phosphoprotein (P)
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9fvr (Zn: 9) - Transcription Repressor Nrdr From E. Coli, Atp/Datp-Bound State, Semet Protein
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9fw2 (Zn: 4) - Sars Cov-2 NSP10 in Complex with the Exon Domain From NSP14
Other atoms:
Na (1);
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9fwj (Zn: 4) - Ensemble Model of Ligand-Free Sars-Cov-2 NSP10-NSP14 (Exon) and in Complex with Partially Bound VT00079
Other atoms:
Mg (1);
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9fws (Zn: 4) - Crystal Structure of Sars-Cov-2 NSP10-NSP14 (Exon) in Complex with VT00258
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9fwt (Zn: 4) - Ensemble Model of Ligand-Free Sars-Cov-2 NSP10-NSP14 (Exon) and in Complex with Partially Bound VT00259
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9fxk (Zn: 8) - Transcription Repressor Nrdr From E. Coli, Amppnp/Atp-Bound State
Other atoms:
Mg (8);
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9fy0 (Zn: 9) - Cryo-Em Structure of Saccharolobus Solfataricus 30S Initiation Complex Bound to Ss-AIF2BETA Leaderless Mrna
Other atoms:
Mg (47);
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9fya (Zn: 1) - Structure of the Sabia Virus Spike Complex in A Closed Conformation
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9fyg (Zn: 1) - Structure of the Sabia Virus Spike Complex H157M Mutant in A Closed Conformation
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9fyl (Zn: 2) - Lacto-N-Biosidase From Treponema Denticola Atcc 35405, Histag Bound in Active Site
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9fym (Zn: 2) - Lacto-N-Biosidase From Treponema Denticola Atcc 35405
Other atoms:
Na (2);
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9fyx (Zn: 9) - Influenza A/H7N9 Polymerase Pre-Cleavage Cap-Snatching Complex
Other atoms:
Mg (2);
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9fz4 (Zn: 4) - Sars Cov-2 NSP10 in Complex with Theexon Domain From NSP14
Other atoms:
Mg (1);
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9fzb (Zn: 1) - Human P53 Dna-Binding Domain Bound to Darpin C10-H82R
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9fzf (Zn: 2) - Transcriptional Repressor Nrdr From E. Coli, Adp/Datp Bound State
Other atoms:
Mg (2);
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9fzk (Zn: 4) - Sars Cov-2 NSP10 in Complex with Theexon Domain From NSP14
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9g08 (Zn: 3) - Structure of Human RNF213 Bound to the Secreted Effector IPAH1.4 From Shigella Flexneri
Other atoms:
Mg (1);
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9g09 (Zn: 3) - Structure of Human RNF213 Bound to the Secreted Effector IPAH2.5 From Shigella Flexneri
Other atoms:
Mg (1);
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9g0a (Zn: 8) - Influenza A/H7N9 Polymerase Post-Cleavage Cap-Snatching Complex
Other atoms:
Mg (2);
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9g0j (Zn: 2) - Structure of the Pro-Pro Endopeptidase (Ppep-3) From Geobacillus Thermodenitrificans
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9g0l (Zn: 3) - Crystal Structure of the Ring-ZNF1 Fragment of SIAH1
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9g1v (Zn: 6) - Yeast Rna Polymerase I Elongation Complex Stalled By An Apurinic Site
Other atoms:
Mg (1);
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9g1x (Zn: 5) - Yeast Rna Polymerase I Elongation Complex Stalled By An Apurinic Site, 11-Subunit
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9g23 (Zn: 6) - Yeast Rna Polymerase I Elongation Complex Stalled By An Apurinic Site Bound to Nucleotide Analog Ampcpp at A-Site
Other atoms:
Mg (1);
Page generated: Sat Aug 23 06:59:58 2025
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