Zinc in PDB, part 528 (files: 21081-21120),
PDB 8q6u-8qk1
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 21081-21120 (PDB 8q6u-8qk1).
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8q6u (Zn: 2) - Crystal Structure of A Double Mutant Acetyltransferase From Bacillus Cereus Species.
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8q7d (Zn: 1) - Neck of Phage 812 After Tail Contraction (C12)
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8q7h (Zn: 10) - Structure of CUL9-RBX1 Ubiquitin E3 Ligase Complex in Unneddylated and Neddylated Conformation - Focused Cullin Dimer
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8q7r (Zn: 3) - Ubiquitin Ligation to Substrate By A Cullin-Ring E3 Ligase & CDC34: NEDD8-CUL2-RBX1-Elob/C-FEM1C with Trapped UBE2R2~Donor Ub-SIL1 Peptide
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8qa7 (Zn: 2) - Crystal Structure of HDAC6 Catalytic Domain 2 From Zebrafish in Complex with Buffer Component.
Other atoms:
K (4);
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8qb3 (Zn: 1) - Addobody Zinc Containing Condition
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8qbn (Zn: 3) - Structure of the Non-Canonical Ctlh E3 Substrate Receptor WDR26 Bound to YPEL5
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8qby (Zn: 1) - Respiratory Complex I From Paracoccus Denitrificans in MSP2N2 Nanodiscs
Other atoms:
Na (1);
Fe (28);
Ca (4);
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8qc0 (Zn: 4) - Nucleoside 2'Deoxyribosyltransferase From Chroococcidiopsis Thermalis Pcc 7203 Wt Ribosylated
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8qch (Zn: 8) - Human Adenosine Deaminase-Like Protein in Complex with Compound AT8001
Other atoms:
F (8);
Na (1);
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8qe8 (Zn: 2) - Structure of the Non-Canonical Ctlh E3 Substrate Receptor WDR26 Bound to NMNAT1 Substrate
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8qeh (Zn: 1) - Crystal Structure of the G11 Protein Heterotrimer Bound to FR900359 Inhibitor
Other atoms:
Cl (1);
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8qek (Zn: 3) - Neck and Tail of Phage 812 After Tail Contraction (Composite)
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8qen (Zn: 1) - Cryo-Em Structure of Apo Clostridioides Difficile Toxin B
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8qeo (Zn: 1) - Cryo-Em Structure Complex of Frizzled-7 and Clostridioides Difficile Toxin B
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8qep (Zn: 4) - Rna Polymerase II Bound to Alu Rna Right Arm
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8qeq (Zn: 7) - Rna Polymerase II Bound to Minimal Alu Rna Right Arm in the Alternative Conformation
Other atoms:
Mg (1);
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8qez (Zn: 7) - Crystal Structure of the Ampa Receptor GLUA2-L504Y-N775S Ligand Binding Domain in Complex with L-Glutamate and Positive Allosteric Modulator BPAM395 at 1.55A Resolution
Other atoms:
Cl (6);
As (1);
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8qf5 (Zn: 5) - Complex Between N-Lobe of Arc and Nanobody E5
Other atoms:
Cl (2);
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8qf8 (Zn: 2) - GH146 Beta-L-Arabinofuranosidase From Bacteroides Thetaioatomicron in Complex with Beta-L-Arabinofurano Cyclophellitol Aziridine
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8qfx (Zn: 4) - Human Angiotensin-1 Converting Enzyme N-Domain in Complex with the Lactotripeptide Ipp
Other atoms:
Mg (4);
Cl (4);
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8qgr (Zn: 1) - Stopper Protein of Phage 812 in Closed Conformation
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8qh8 (Zn: 1) - Human Carbonic Anhydrase II in Complex with Lasamide (2,4-Dichloro 5- Sulfamoyl Benzoic Acid)
Other atoms:
Cl (2);
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8qh9 (Zn: 1) - X-Ray Structure of Danio Rerio Histone Deacetylase 6 (HDAC6) CD2 in Complex with A S-29B
Other atoms:
K (2);
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8qhg (Zn: 1) - Human Carbonic Anhydrase IX Mimic in Complex with Lasamide (2,4- Dichloro 5-Sulfamoyl Benzoic Acid)
Other atoms:
Ni (1);
Cl (2);
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8qhj (Zn: 1) - Human Carbonic Anhydrase XII Mimic in Complex with Lasamide (2,4- Dichloro-5-Sulfamoyl Benzoic Acid)
Other atoms:
Cl (2);
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8qhl (Zn: 2) - Human Angiotensin-1 Converting Enzyme N-Domain in Complex with the Lactotripeptide Vpp
Other atoms:
Cl (2);
Mg (1);
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8qhp (Zn: 2) - Cysteine Trna Ligase Homodimer
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8qic (Zn: 2) - Structure-Based Identification of Salicylic Acid Derivatives As Malarial Threonyl Trna-Synthetase Inhibitors
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8qj7 (Zn: 3) - Cryo-Em Structure of Human Dna Polymerase Alpha-Primase in Pre- Initiation Stage 1
Other atoms:
Fe (4);
Mn (2);
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8qjd (Zn: 2) - T6SS-Linked Rhs Repeat Protein - Salmonella Bongori Rhs-Core Domain
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8qje (Zn: 1) - Neck of Phage 812 Virion (C12)
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8qjl (Zn: 3) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia
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8qjm (Zn: 6) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Cytidine-5'-Monophosphate
Other atoms:
Na (1);
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8qjn (Zn: 6) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Adenosine-5'-Monophosphate
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8qjo (Zn: 6) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Guanosine-5'-Monophosphate
Other atoms:
Na (1);
Cl (1);
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8qjp (Zn: 6) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Uridine - 5'- Monophosphate
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8qjq (Zn: 6) - SMNUC1 Nuclease From Stenotrophomonas Maltophilia in Complex with Cytidine - 5' - Monophosphate As An Inhibitor.
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8qjt (Zn: 4) - Brm (SMARCA2) Bromodomain in Complex with Ligand 10
Other atoms:
Cl (1);
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8qk1 (Zn: 1) - Crystal Structure of Trichuris Suis Beta-N-Acetyl-D-Hexosaminidase - Hex-2 in Apo Form
Page generated: Mon Dec 15 11:44:31 2025
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