Zinc in PDB, part 502 (files: 20041-20080),
PDB 8d1t-8dc6
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 20041-20080 (PDB 8d1t-8dc6).
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8d1t (Zn: 1) - Crystal Structure of Human USP30 in Complex with A Covalent Inhibitor 552 and A Fab
Other atoms:
Cl (1);
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8d1v (Zn: 4) - Cryo-Em Structure of Guide Rna and Target Rna Bound CAS7-11
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8d2z (Zn: 2) - Crystal Structure of A Metallo-Beta-Lactamase Superfamily Protein From Burkholderia Cenocepacia
Other atoms:
Cl (2);
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8d4a (Zn: 1) - CAS12A2 Quaternary Complex
Other atoms:
Mg (2);
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8d4t (Zn: 1) - Mammalian Civ with Gdn Bound
Other atoms:
Mg (1);
Na (1);
Cu (3);
Fe (2);
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8d4x (Zn: 6) - Structure of the Human UBR5 Hect-Type E3 Ubiquitin Ligase in A Dimeric Form
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8d51 (Zn: 1) - Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing Beta-3-Homotryptophan
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8d52 (Zn: 1) - Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine
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8d7u (Zn: 1) - Cereblon~DDB1 Bound to Cc-92480 with DDB1 in the Linear Conformation
Other atoms:
F (1);
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8d7v (Zn: 1) - Cereblon~DDB1 Bound to Cc-92480 with DDB1 in the Twisted Conformation
Other atoms:
F (1);
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8d7w (Zn: 1) - Cereblon~DDB1 Bound to Cc-92480 with DDB1 in the Hinged Conformation
Other atoms:
F (1);
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8d7x (Zn: 1) - Cereblon~DDB1 in the Apo Form with DDB1 in the Hinged Conformation
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8d7y (Zn: 1) - Cereblon-DDB1 in the Apo Form with DDB1 in the Twisted Conformation
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8d7z (Zn: 2) - Cereblon-DDB1 Bound to Cc-92480 and Ikaros ZF1-2-3
Other atoms:
F (1);
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8d80 (Zn: 2) - Cereblon~DDB1 Bound to Iberdomide and Ikaros ZF1-2-3
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8d81 (Zn: 1) - Cereblon~DDB1 Bound to Pomalidomide
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8d8n (Zn: 4) - Gramp Non-Match Pfs Target Rna
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8d8o (Zn: 1) - Cryo-Em Structure of Substrate Unbound Papp-A
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8d97 (Zn: 4) - Apo Gramp
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8d98 (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 5
Other atoms:
F (4);
K (4);
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8d99 (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 7
Other atoms:
K (4);
F (3);
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8d9a (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 8
Other atoms:
K (4);
F (6);
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8d9b (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 9
Other atoms:
K (4);
F (8);
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8d9c (Zn: 2) - Crystal Structure of Danio Rerio Histone Deacetylase 6 Catalytic Domain 2 Complexed with Fluorinated Inhibitor 10
Other atoms:
F (10);
K (4);
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8d9d (Zn: 3) - Human Dna Polymerase-Alpha/Primase Elongation Complex II Bound to Primer/Template
Other atoms:
Mg (2);
Fe (4);
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8d9e (Zn: 4) - Gramp-Match Pfs Target
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8d9f (Zn: 4) - Gramp-Tpr-Chat (Craspase)
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8d9g (Zn: 4) - Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase)
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8d9h (Zn: 4) - Gramp-Tpr-Chat Match Pfs Target Rna(Craspase)
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8d9i (Zn: 4) - Gramp Non-Matching Pfs-with Mg
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8da0 (Zn: 18) - Crystal Structure of Mamba Alpha-Neurotoxin in Complex with Centi- 3FTX-D09 Antibody
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8dar (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Unbound But in the Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp
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8das (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta)
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8dat (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb)
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8dau (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Folded Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Ua)
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8dav (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc)
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8daw (Zn: 2) - Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Ud)
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8db4 (Zn: 9) - Crystal Structure of the Peanut Allergen Ara H 2 Bound By Two Neutralizing Antibodies 22S1 and 13T1
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8dc4 (Zn: 4) - Crystal Structure of P53 Y220C Covalently Bound to Carbazole KG3
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8dc6 (Zn: 4) - Crystal Structure of P53 Y220C Covalently Bound to Indole KG6
Other atoms:
Mg (2);
Page generated: Mon Dec 15 11:43:32 2025
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