Zinc in PDB 1xv2: Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
Enzymatic activity of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
All present enzymatic activity of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus:
4.1.1.5;
Protein crystallography data
The structure of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus, PDB code: 1xv2
was solved by
N.E.C.Duke,
R.Zhang,
P.Quartey,
F.Collart,
D.Holzle,
A.Joachimiak,
Midwest Center For Structural Genomics (Mcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.24 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.434,
160.005,
68.056,
90.00,
107.55,
90.00
|
R / Rfree (%)
|
19.1 /
23.6
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
(pdb code 1xv2). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus, PDB code: 1xv2:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 1xv2
Go back to
Zinc Binding Sites List in 1xv2
Zinc binding site 1 out
of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn801
b:17.5
occ:1.00
|
NE2
|
A:HIS175
|
2.3
|
10.7
|
1.0
|
NE2
|
A:HIS173
|
2.3
|
18.1
|
1.0
|
ND1
|
A:HIS186
|
2.3
|
13.0
|
1.0
|
O
|
A:HOH802
|
2.4
|
14.6
|
1.0
|
O
|
A:HOH857
|
2.5
|
12.8
|
1.0
|
O
|
A:HOH888
|
2.5
|
18.2
|
1.0
|
CE1
|
A:HIS186
|
3.0
|
13.2
|
1.0
|
CE1
|
A:HIS173
|
3.2
|
21.3
|
1.0
|
CD2
|
A:HIS175
|
3.2
|
11.9
|
1.0
|
CE1
|
A:HIS175
|
3.2
|
12.4
|
1.0
|
CD2
|
A:HIS173
|
3.3
|
18.7
|
1.0
|
CG
|
A:HIS186
|
3.4
|
12.3
|
1.0
|
CB
|
A:HIS186
|
3.8
|
12.3
|
1.0
|
OE1
|
A:GLU45
|
3.8
|
12.3
|
1.0
|
NH2
|
A:ARG124
|
4.0
|
14.7
|
1.0
|
OE1
|
A:GLU234
|
4.1
|
45.1
|
1.0
|
NE2
|
A:HIS186
|
4.2
|
13.7
|
1.0
|
ND1
|
A:HIS173
|
4.3
|
20.6
|
1.0
|
O
|
A:HOH889
|
4.3
|
32.1
|
1.0
|
ND1
|
A:HIS175
|
4.3
|
13.5
|
1.0
|
CD2
|
A:HIS186
|
4.4
|
13.6
|
1.0
|
CG
|
A:HIS175
|
4.4
|
13.2
|
1.0
|
CG
|
A:HIS173
|
4.4
|
18.9
|
1.0
|
CD
|
A:GLU234
|
4.7
|
44.4
|
1.0
|
CA
|
A:HIS186
|
4.7
|
13.4
|
1.0
|
CD
|
A:GLU45
|
4.8
|
13.5
|
1.0
|
CD1
|
A:ILE36
|
4.9
|
17.0
|
1.0
|
CZ
|
A:ARG124
|
5.0
|
16.3
|
1.0
|
NE
|
A:ARG124
|
5.0
|
15.3
|
1.0
|
|
Zinc binding site 2 out
of 4 in 1xv2
Go back to
Zinc Binding Sites List in 1xv2
Zinc binding site 2 out
of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn802
b:29.5
occ:1.00
|
NE2
|
B:HIS175
|
2.3
|
18.4
|
1.0
|
O
|
B:HOH864
|
2.3
|
23.4
|
1.0
|
ND1
|
B:HIS186
|
2.3
|
18.8
|
1.0
|
NE2
|
B:HIS173
|
2.3
|
21.8
|
1.0
|
O
|
B:HOH815
|
2.6
|
22.0
|
1.0
|
O
|
B:HOH842
|
2.8
|
28.3
|
1.0
|
CE1
|
B:HIS186
|
3.1
|
19.6
|
1.0
|
CE1
|
B:HIS175
|
3.3
|
19.2
|
1.0
|
CD2
|
B:HIS175
|
3.3
|
16.7
|
1.0
|
CE1
|
B:HIS173
|
3.3
|
22.3
|
1.0
|
CD2
|
B:HIS173
|
3.3
|
22.3
|
1.0
|
OE1
|
B:GLU45
|
3.3
|
35.6
|
1.0
|
CG
|
B:HIS186
|
3.4
|
18.4
|
1.0
|
CB
|
B:HIS186
|
3.8
|
20.3
|
1.0
|
NH2
|
B:ARG124
|
4.0
|
29.1
|
1.0
|
NE2
|
B:HIS186
|
4.3
|
19.0
|
1.0
|
ND1
|
B:HIS175
|
4.4
|
19.3
|
1.0
|
ND1
|
B:HIS173
|
4.4
|
22.1
|
1.0
|
CG
|
B:HIS175
|
4.4
|
16.7
|
1.0
|
CD2
|
B:HIS186
|
4.5
|
18.1
|
1.0
|
CG
|
B:HIS173
|
4.5
|
20.9
|
1.0
|
CD
|
B:GLU45
|
4.5
|
35.8
|
1.0
|
CA
|
B:HIS186
|
4.7
|
20.5
|
1.0
|
O
|
B:GLU234
|
4.9
|
58.9
|
1.0
|
|
Zinc binding site 3 out
of 4 in 1xv2
Go back to
Zinc Binding Sites List in 1xv2
Zinc binding site 3 out
of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn803
b:10.2
occ:1.00
|
NE2
|
C:HIS173
|
2.2
|
7.3
|
1.0
|
NE2
|
C:HIS175
|
2.3
|
3.3
|
1.0
|
ND1
|
C:HIS186
|
2.3
|
1.8
|
1.0
|
O
|
C:HOH831
|
2.3
|
15.9
|
1.0
|
O
|
C:HOH960
|
2.4
|
13.3
|
1.0
|
O
|
C:HOH959
|
2.6
|
14.7
|
1.0
|
CE1
|
C:HIS186
|
3.1
|
3.7
|
1.0
|
CE1
|
C:HIS173
|
3.2
|
10.4
|
1.0
|
CD2
|
C:HIS175
|
3.2
|
3.5
|
1.0
|
CD2
|
C:HIS173
|
3.2
|
6.7
|
1.0
|
CE1
|
C:HIS175
|
3.3
|
5.8
|
1.0
|
CG
|
C:HIS186
|
3.4
|
2.3
|
1.0
|
OE1
|
C:GLU45
|
3.8
|
7.8
|
1.0
|
CB
|
C:HIS186
|
3.8
|
2.1
|
1.0
|
NH2
|
C:ARG124
|
4.1
|
11.0
|
1.0
|
OE1
|
C:GLU234
|
4.2
|
31.7
|
1.0
|
NE2
|
C:HIS186
|
4.3
|
3.5
|
1.0
|
ND1
|
C:HIS173
|
4.3
|
9.7
|
1.0
|
CG
|
C:HIS173
|
4.4
|
10.2
|
1.0
|
CG
|
C:HIS175
|
4.4
|
5.2
|
1.0
|
ND1
|
C:HIS175
|
4.4
|
6.7
|
1.0
|
CD2
|
C:HIS186
|
4.4
|
2.4
|
1.0
|
CA
|
C:HIS186
|
4.7
|
3.8
|
1.0
|
CD
|
C:GLU45
|
4.8
|
5.7
|
1.0
|
OE2
|
C:GLU234
|
5.0
|
30.1
|
1.0
|
|
Zinc binding site 4 out
of 4 in 1xv2
Go back to
Zinc Binding Sites List in 1xv2
Zinc binding site 4 out
of 4 in the Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Crystal Structure of A Protein of Unknown Function Similar to Alpha-Acetolactate Decarboxylase From Staphylococcus Aureus within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn804
b:12.5
occ:1.00
|
NE2
|
D:HIS173
|
2.2
|
9.9
|
1.0
|
NE2
|
D:HIS175
|
2.3
|
3.9
|
1.0
|
ND1
|
D:HIS186
|
2.3
|
4.6
|
1.0
|
O
|
D:HOH820
|
2.4
|
13.1
|
1.0
|
O
|
D:HOH1025
|
2.5
|
20.6
|
1.0
|
O
|
D:HOH1024
|
2.6
|
13.8
|
1.0
|
CE1
|
D:HIS186
|
3.1
|
5.3
|
1.0
|
CE1
|
D:HIS173
|
3.2
|
8.7
|
1.0
|
CE1
|
D:HIS175
|
3.2
|
5.2
|
1.0
|
CD2
|
D:HIS173
|
3.2
|
10.9
|
1.0
|
CD2
|
D:HIS175
|
3.2
|
2.8
|
1.0
|
CG
|
D:HIS186
|
3.4
|
4.4
|
1.0
|
OE1
|
D:GLU45
|
3.7
|
9.5
|
1.0
|
CB
|
D:HIS186
|
3.8
|
5.1
|
1.0
|
NH2
|
D:ARG124
|
4.1
|
10.4
|
1.0
|
O
|
D:HOH1015
|
4.2
|
22.7
|
1.0
|
NE2
|
D:HIS186
|
4.3
|
7.9
|
1.0
|
ND1
|
D:HIS173
|
4.3
|
10.6
|
1.0
|
ND1
|
D:HIS175
|
4.3
|
5.0
|
1.0
|
CG
|
D:HIS173
|
4.4
|
10.2
|
1.0
|
CG
|
D:HIS175
|
4.4
|
4.8
|
1.0
|
CD2
|
D:HIS186
|
4.4
|
5.0
|
1.0
|
CA
|
D:HIS186
|
4.7
|
6.0
|
1.0
|
CD
|
D:GLU45
|
4.8
|
10.3
|
1.0
|
CZ
|
D:ARG124
|
5.0
|
14.5
|
1.0
|
|
Reference:
N.E.C.Duke,
R.Zhang,
P.Quartey,
F.Collart,
D.Holzle,
A.Joachimiak.
Crystal Structure of A Hypothetical Protein Similar to Alpha-Acetolactate To Be Published.
Page generated: Wed Oct 16 20:38:05 2024
|