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Zinc in PDB 1wen: Solution Structure of Phd Domain in ING1-Like Protein BAC25079

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Phd Domain in ING1-Like Protein BAC25079 (pdb code 1wen). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Phd Domain in ING1-Like Protein BAC25079, PDB code: 1wen:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1wen

Go back to Zinc Binding Sites List in 1wen
Zinc binding site 1 out of 2 in the Solution Structure of Phd Domain in ING1-Like Protein BAC25079


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Phd Domain in ING1-Like Protein BAC25079 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
SG A:CYS46 2.3 0.0 1.0
SG A:CYS21 2.3 0.0 1.0
ND1 A:HIS43 2.3 0.0 1.0
SG A:CYS19 2.4 0.0 1.0
HB2 A:HIS43 2.7 0.0 1.0
HB2 A:CYS21 3.0 0.0 1.0
HB3 A:CYS19 3.0 0.0 1.0
H A:CYS21 3.2 0.0 1.0
CB A:CYS19 3.2 0.0 1.0
CG A:HIS43 3.2 0.0 1.0
CB A:CYS21 3.3 0.0 1.0
CE1 A:HIS43 3.3 0.0 1.0
HB2 A:CYS46 3.3 0.0 1.0
H A:HIS43 3.4 0.0 1.0
CB A:CYS46 3.4 0.0 1.0
CB A:HIS43 3.5 0.0 1.0
HB3 A:CYS46 3.5 0.0 1.0
HE1 A:HIS43 3.6 0.0 1.0
HH A:TYR26 3.6 0.0 1.0
HB2 A:CYS19 3.6 0.0 1.0
OH A:TYR26 3.9 0.0 1.0
HB3 A:CYS21 4.0 0.0 1.0
N A:CYS21 4.0 0.0 1.0
N A:HIS43 4.2 0.0 1.0
HB3 A:HIS43 4.2 0.0 1.0
CA A:CYS21 4.3 0.0 1.0
CD2 A:HIS43 4.4 0.0 1.0
CA A:HIS43 4.4 0.0 1.0
NE2 A:HIS43 4.4 0.0 1.0
H A:LEU20 4.6 0.0 1.0
CA A:CYS19 4.6 0.0 1.0
HA A:CYS21 4.8 0.0 1.0
N A:LEU20 4.8 0.0 1.0
CA A:CYS46 4.8 0.0 1.0
C A:CYS19 4.8 0.0 1.0
CZ A:TYR26 4.8 0.0 1.0
H A:CYS46 4.9 0.0 1.0
HD12 A:LEU20 4.9 0.0 1.0
HA A:PHE42 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 1wen

Go back to Zinc Binding Sites List in 1wen
Zinc binding site 2 out of 2 in the Solution Structure of Phd Domain in ING1-Like Protein BAC25079


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Phd Domain in ING1-Like Protein BAC25079 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS59 2.3 0.0 1.0
SG A:CYS32 2.3 0.0 1.0
SG A:CYS62 2.3 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
HB2 A:CYS37 2.9 0.0 1.0
HB3 A:CYS59 3.1 0.0 1.0
HB2 A:CYS32 3.2 0.0 1.0
H A:CYS59 3.2 0.0 1.0
HB2 A:CYS62 3.2 0.0 1.0
CB A:CYS37 3.2 0.0 1.0
CB A:CYS32 3.3 0.0 1.0
CB A:CYS59 3.3 0.0 1.0
CB A:CYS62 3.5 0.0 1.0
HB3 A:CYS32 3.5 0.0 1.0
HE1 A:PHE42 3.6 0.0 1.0
HB3 A:ASN34 3.7 0.0 1.0
HB3 A:CYS37 3.8 0.0 1.0
N A:CYS59 3.9 0.0 1.0
HB3 A:CYS62 4.1 0.0 1.0
H A:CYS62 4.1 0.0 1.0
HB2 A:CYS59 4.2 0.0 1.0
HD21 A:ASN34 4.2 0.0 1.0
CA A:CYS59 4.2 0.0 1.0
HB2 A:ASN34 4.2 0.0 1.0
HZ A:PHE42 4.3 0.0 1.0
HA A:GLU40 4.4 0.0 1.0
CE1 A:PHE42 4.4 0.0 1.0
H A:GLU40 4.4 0.0 1.0
HA A:CYS37 4.4 0.0 1.0
HB2 A:ARG61 4.5 0.0 1.0
N A:CYS62 4.5 0.0 1.0
CB A:ASN34 4.5 0.0 1.0
CA A:CYS37 4.5 0.0 1.0
CA A:CYS62 4.6 0.0 1.0
HA A:PHE58 4.6 0.0 1.0
CA A:CYS32 4.7 0.0 1.0
CZ A:PHE42 4.7 0.0 1.0
O A:CYS59 4.8 0.0 1.0
H A:ARG61 4.8 0.0 1.0
H A:ASN34 4.8 0.0 1.0
C A:CYS59 4.9 0.0 1.0
HA A:CYS32 4.9 0.0 1.0
HA A:CYS62 5.0 0.0 1.0

Reference:

F.He, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Terada, S.Yokoyama. Solution Structure of Phd Domain in ING1-Like Protein BAC25079 To Be Published.
Page generated: Wed Oct 16 19:59:52 2024

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