Atomistry » Zinc » PDB 1w5m-1wfx » 1wdk
Atomistry »
  Zinc »
    PDB 1w5m-1wfx »
      1wdk »

Zinc in PDB 1wdk: Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2)

Enzymatic activity of Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2)

All present enzymatic activity of Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2):
1.1.1.35; 2.3.1.16; 4.2.1.17; 5.1.2.3; 5.3.3.8;

Protein crystallography data

The structure of Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2), PDB code: 1wdk was solved by M.Ishikawa, D.Tsuchiya, T.Oyama, Y.Tsunaka, K.Morikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 180.705, 94.578, 160.001, 90.00, 111.45, 90.00
R / Rfree (%) 20.3 / 24.4

Other elements in 1wdk:

The structure of Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2) also contains other interesting chemical elements:

Mercury (Hg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2) (pdb code 1wdk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2), PDB code: 1wdk:

Zinc binding site 1 out of 1 in 1wdk

Go back to Zinc Binding Sites List in 1wdk
Zinc binding site 1 out of 1 in the Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (NATIVE2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn716

b:43.2
occ:1.00
NE2 A:HIS550 2.1 45.4 1.0
CE1 A:HIS550 2.8 44.3 1.0
OD1 A:ASP573 3.2 48.8 1.0
CD2 A:HIS550 3.4 44.4 1.0
NH2 A:ARG553 4.0 60.6 1.0
ND1 A:HIS550 4.0 44.9 1.0
CG A:HIS550 4.3 44.2 1.0
CD2 A:TYR576 4.4 46.7 1.0
CG A:ASP573 4.4 47.5 1.0
OE2 A:GLU577 4.5 40.6 1.0
CE2 A:TYR576 4.8 47.8 1.0
CZ A:ARG553 5.0 60.9 1.0

Reference:

M.Ishikawa, D.Tsuchiya, T.Oyama, Y.Tsunaka, K.Morikawa. Structural Basis For Channelling Mechanism of A Fatty Acid Beta-Oxidation Multienzyme Complex Embo J. V. 23 2745 2004.
ISSN: ISSN 0261-4189
PubMed: 15229654
DOI: 10.1038/SJ.EMBOJ.7600298
Page generated: Wed Oct 16 19:58:37 2024

Last articles

Na in 5CZZ
Na in 5D3D
Na in 5CXP
Na in 5D26
Na in 5D18
Na in 5CZG
Na in 5CY8
Na in 5CY7
Na in 5CXB
Na in 5CXJ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy