Zinc in PDB 1vje: Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine

The structure of Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine, PDB code: 1vje was solved by Structural Genomix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.04 / 1.64
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.548, 81.917, 49.327, 90.00, 102.81, 90.00
R / Rfree (%)	18.8 / 21.5

The binding sites of Zinc atom in the Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine (pdb code 1vje). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine, PDB code: 1vje:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn167 b:15.6 occ:1.00 NE2 A:HIS57 2.1 11.4 1.0 NE2 A:HIS61 2.1 11.5 1.0 O B:HOH300 2.2 9.2 1.0 SG A:CYS125 2.2 11.6 1.0 CE1 A:HIS57 2.9 10.4 1.0 CE1 A:HIS61 3.0 13.0 1.0 CD2 A:HIS57 3.1 12.1 1.0 CD2 A:HIS61 3.2 11.7 1.0 CB A:CYS125 3.4 12.3 1.0 O A:HOH418 3.9 12.0 1.0 CA A:CYS125 3.9 13.2 1.0 NE2 A:HIS131 4.0 12.6 1.0 ND1 A:HIS57 4.0 10.8 1.0 ND1 A:HIS61 4.1 9.3 1.0 CE1 A:HIS131 4.1 13.5 1.0 CG A:HIS57 4.2 8.7 1.0 CB B:CSD82 4.2 9.2 1.0 N A:GLY126 4.2 11.5 1.0 CG A:HIS61 4.3 11.0 1.0 O A:HOH443 4.3 21.8 1.0 C A:CYS125 4.5 12.9 1.0 OE1 A:GLU60 4.5 10.5 1.0 CE A:MSE401 4.6 16.7 1.0 N A:ASN127 4.7 12.1 1.0 CA B:CSD82 4.8 11.0 1.0 N B:CSD82 4.8 8.5 1.0 OD2 B:CSD82 5.0 12.9 1.0 O A:GLY119 5.0 14.1 1.0 O A:ASN127 5.0 11.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Autoinducer-2 Synthesis Protein with Bound Selenomethionine within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn167 b:22.1 occ:1.00 NE2 B:HIS57 2.1 11.3 1.0 NE2 B:HIS61 2.1 14.5 1.0 O A:HOH520 2.2 14.4 1.0 SG B:CYS125 2.2 16.5 1.0 CE1 B:HIS57 2.9 11.8 1.0 CE1 B:HIS61 2.9 13.6 1.0 CD2 B:HIS57 3.1 12.8 1.0 CD2 B:HIS61 3.3 13.8 1.0 CB B:CYS125 3.4 19.0 1.0 NE2 B:HIS131 3.9 12.0 1.0 O B:HOH170 3.9 14.1 1.0 CA B:CYS125 4.0 17.4 1.0 ND1 B:HIS57 4.0 10.7 1.0 CB A:CSD82 4.1 9.3 1.0 ND1 B:HIS61 4.1 13.4 1.0 CG B:HIS57 4.1 9.4 1.0 CE1 B:HIS131 4.2 11.8 1.0 O A:HOH429 4.3 24.8 1.0 CG B:HIS61 4.3 11.0 1.0 N B:GLY126 4.3 15.1 1.0 OE1 B:GLU60 4.5 13.2 1.0 C B:CYS125 4.5 16.6 1.0 N A:CSD82 4.8 10.9 1.0 CA A:CSD82 4.8 10.6 1.0 CE A:MSE301 4.8 21.9 1.0 N B:ASN127 4.9 14.7 1.0 SG A:CSD82 5.0 9.5 1.0 OD2 A:CSD82 5.0 14.8 1.0

H.A.Lewis, E.B.Furlong, B.Laubert, G.A.Eroshkina, Y.Batiyenko, J.M.Adams, M.G.Bergseid, C.D.Marsh, T.S.Peat, W.E.Sanderson, J.M.Sauder, S.G.Buchanan. A Structural Genomics Approach to the Study of Quorum Sensing: Crystal Structures of Three Luxs Orthologs Structure V. 9 527 2001.
ISSN: ISSN 0969-2126
PubMed: 11435117
DOI: 10.1016/S0969-2126(01)00613-X