Zinc in PDB 1v5n: Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana

The binding sites of Zinc atom in the Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana (pdb code 1v5n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana, PDB code: 1v5n:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS75 2.3 0.0 1.0 SG A:CYS53 2.3 0.0 1.0 SG A:CYS50 2.4 0.0 1.0 ND1 A:HIS72 2.4 0.0 1.0 HB2 A:HIS72 2.6 0.0 1.0 H A:CYS53 3.0 0.0 1.0 HB3 A:CYS50 3.2 0.0 1.0 CB A:CYS50 3.2 0.0 1.0 CG A:HIS72 3.2 0.0 1.0 HB2 A:CYS50 3.3 0.0 1.0 HB3 A:LYS52 3.3 0.0 1.0 CB A:HIS72 3.4 0.0 1.0 CE1 A:HIS72 3.4 0.0 1.0 HB3 A:CYS53 3.5 0.0 1.0 HB2 A:CYS75 3.5 0.0 1.0 HB2 A:GLU55 3.5 0.0 1.0 CB A:CYS53 3.5 0.0 1.0 CB A:CYS75 3.5 0.0 1.0 HE1 A:HIS72 3.7 0.0 1.0 HD3 A:LYS52 3.7 0.0 1.0 H A:HIS72 3.8 0.0 1.0 N A:CYS53 3.8 0.0 1.0 HB3 A:CYS75 3.8 0.0 1.0 HB3 A:HIS72 4.0 0.0 1.0 CA A:CYS53 4.3 0.0 1.0 H A:GLU55 4.3 0.0 1.0 N A:HIS72 4.4 0.0 1.0 HB2 A:CYS53 4.4 0.0 1.0 CD2 A:HIS72 4.4 0.0 1.0 H A:LYS52 4.4 0.0 1.0 CB A:LYS52 4.4 0.0 1.0 NE2 A:HIS72 4.5 0.0 1.0 CA A:HIS72 4.5 0.0 1.0 HD23 A:LEU71 4.6 0.0 1.0 CB A:GLU55 4.6 0.0 1.0 CD A:LYS52 4.6 0.0 1.0 H A:GLU54 4.7 0.0 1.0 CA A:CYS50 4.7 0.0 1.0 H A:CYS75 4.7 0.0 1.0 HD2 A:LYS52 4.9 0.0 1.0 C A:LYS52 4.9 0.0 1.0 CA A:CYS75 4.9 0.0 1.0 HG3 A:GLU55 4.9 0.0 1.0 C A:CYS53 4.9 0.0 1.0 CG A:LYS52 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS64 2.3 0.0 1.0 NE2 A:HIS35 2.3 0.0 1.0 SG A:CYS67 2.4 0.0 1.0 ND1 A:HIS38 2.4 0.0 1.0 HB3 A:GLU66 2.6 0.0 1.0 HB2 A:HIS38 2.7 0.0 1.0 HD2 A:HIS35 2.9 0.0 1.0 CD2 A:HIS35 3.0 0.0 1.0 CG A:HIS38 3.3 0.0 1.0 H A:CYS67 3.3 0.0 1.0 HB2 A:CYS67 3.4 0.0 1.0 CE1 A:HIS38 3.4 0.0 1.0 CB A:HIS38 3.4 0.0 1.0 CB A:CYS67 3.5 0.0 1.0 CE1 A:HIS35 3.5 0.0 1.0 CB A:CYS64 3.5 0.0 1.0 HB3 A:CYS64 3.6 0.0 1.0 HE1 A:HIS38 3.7 0.0 1.0 HB2 A:CYS64 3.7 0.0 1.0 N A:CYS67 3.7 0.0 1.0 CB A:GLU66 3.7 0.0 1.0 HE1 A:HIS35 3.9 0.0 1.0 HB3 A:HIS38 4.0 0.0 1.0 HB2 A:GLU66 4.1 0.0 1.0 CG A:HIS35 4.2 0.0 1.0 CA A:CYS67 4.2 0.0 1.0 H A:GLU66 4.3 0.0 1.0 HG2 A:GLU66 4.3 0.0 1.0 OE1 A:GLU66 4.3 0.0 1.0 C A:GLU66 4.3 0.0 1.0 HD12 A:LEU40 4.3 0.0 1.0 HB3 A:CYS67 4.4 0.0 1.0 CD2 A:HIS38 4.5 0.0 1.0 ND1 A:HIS35 4.5 0.0 1.0 CA A:GLU66 4.5 0.0 1.0 NE2 A:HIS38 4.5 0.0 1.0 CG A:GLU66 4.5 0.0 1.0 H A:HIS38 4.5 0.0 1.0 CA A:HIS38 4.6 0.0 1.0 H A:ASP68 4.6 0.0 1.0 HD11 A:LEU40 4.7 0.0 1.0 HB2 A:PHE69 4.7 0.0 1.0 N A:GLU66 4.8 0.0 1.0 N A:HIS38 4.8 0.0 1.0 CD A:GLU66 4.8 0.0 1.0 HB2 A:GLU37 4.9 0.0 1.0 CA A:CYS64 4.9 0.0 1.0 H A:PHE69 4.9 0.0 1.0 CD1 A:LEU40 4.9 0.0 1.0 C A:HIS38 5.0 0.0 1.0 HB3 A:PHE69 5.0 0.0 1.0

K.Miyamoto, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama. Solution Structure of DC1 Domain of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana To Be Published.