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Zinc in PDB 1uuf: Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk

Protein crystallography data

The structure of Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk, PDB code: 1uuf was solved by S.Jeudy, J.M.Claverie, C.Abergel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.70 / 1.76
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.536, 78.805, 70.685, 90.00, 109.60, 90.00
R / Rfree (%) 18.4 / 20.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk (pdb code 1uuf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk, PDB code: 1uuf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1uuf

Go back to Zinc Binding Sites List in 1uuf
Zinc binding site 1 out of 2 in the Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:16.7
occ:1.00
SG A:CYS93 2.4 14.3 1.0
SG A:CYS96 2.4 16.0 1.0
SG A:CYS107 2.4 13.6 1.0
SG A:CYS99 2.4 13.5 1.0
CB A:CYS107 3.2 13.1 1.0
CB A:CYS93 3.4 14.6 1.0
CB A:CYS96 3.4 16.6 1.0
CB A:CYS99 3.5 13.7 1.0
N A:CYS93 3.7 14.2 1.0
N A:LYS94 3.8 17.0 1.0
N A:CYS96 3.9 17.9 1.0
CA A:CYS93 3.9 14.9 1.0
CA A:CYS107 4.1 12.6 1.0
O A:HOH2150 4.1 20.5 1.0
N A:CYS99 4.2 13.6 1.0
CA A:CYS96 4.2 15.9 1.0
C A:CYS93 4.2 16.2 1.0
CA A:CYS99 4.4 13.9 1.0
N A:HIS95 4.5 17.8 1.0
CB A:SER92 4.7 13.9 1.0
CA A:LYS94 4.8 18.2 1.0
C A:SER92 4.8 13.1 1.0
O A:HOH2125 4.8 27.9 1.0
C A:CYS96 4.9 16.2 1.0
OG A:SER92 4.9 13.7 1.0
C A:CYS107 4.9 14.2 1.0
O A:CYS96 4.9 15.9 1.0
N A:ASP108 5.0 16.4 1.0

Zinc binding site 2 out of 2 in 1uuf

Go back to Zinc Binding Sites List in 1uuf
Zinc binding site 2 out of 2 in the Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:18.1
occ:1.00
NE2 A:HIS62 2.2 14.4 1.0
O A:HOH2375 2.3 13.0 1.0
SG A:CYS40 2.4 15.2 1.0
SG A:CYS158 2.4 14.3 1.0
CE1 A:HIS62 3.1 14.3 1.0
CD2 A:HIS62 3.1 13.1 1.0
CB A:CYS40 3.3 15.8 1.0
CB A:CYS158 3.5 11.7 1.0
O A:HOH2370 3.6 25.8 1.0
OG A:SER42 4.0 19.1 1.0
CB A:SER42 4.0 16.7 1.0
SG A:CYS88 4.0 14.0 1.0
O A:HOH2152 4.1 40.4 1.0
ND1 A:HIS62 4.2 13.2 1.0
CG A:HIS62 4.2 13.2 1.0
O A:HOH2151 4.7 33.2 1.0
OE2 A:GLU63 4.7 14.4 1.0
CA A:CYS40 4.7 14.3 1.0
CA A:CYS158 4.9 11.8 1.0
N A:SER42 4.9 17.4 1.0

Reference:

S.Jeudy, J.M.Claverie, C.Abergel. Crystal Structure of A Yahk, A Zinc-Type Alcohol Dehydrogenase-Like Protein To Be Published.
Page generated: Wed Oct 16 19:37:44 2024

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