Zinc in PDB 1u2w: Crystal Structure of the Staphylococcus Aureus PI258 Cadc

The structure of Crystal Structure of the Staphylococcus Aureus PI258 Cadc, PDB code: 1u2w was solved by J.Ye, A.Kandegedara, P.Martin, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.63 / 1.90
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	116.536, 116.536, 41.842, 90.00, 90.00, 90.00
R / Rfree (%)	20.5 / 26.1

The binding sites of Zinc atom in the Crystal Structure of the Staphylococcus Aureus PI258 Cadc (pdb code 1u2w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of the Staphylococcus Aureus PI258 Cadc, PDB code: 1u2w:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of the Staphylococcus Aureus PI258 Cadc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Staphylococcus Aureus PI258 Cadc within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:59.0 occ:0.50 OD2 A:ASP101 2.2 58.5 1.0 ND1 A:HIS103 2.5 52.9 1.0 OE2 B:GLU117 2.5 60.6 1.0 ND1 B:HIS114 2.5 42.5 1.0 CG A:ASP101 2.6 51.9 1.0 OD1 A:ASP101 2.6 57.1 1.0 CD B:GLU117 3.0 59.0 1.0 CG B:HIS114 3.3 42.3 1.0 CE1 A:HIS103 3.4 54.1 1.0 CG B:GLU117 3.4 57.2 1.0 CG A:HIS103 3.4 47.4 1.0 CB B:HIS114 3.4 41.1 1.0 CA B:HIS114 3.5 40.6 1.0 CE1 B:HIS114 3.6 41.5 1.0 CB A:HIS103 3.7 44.6 1.0 OE1 B:GLU117 3.9 62.0 1.0 CB A:ASP101 3.9 48.9 1.0 O B:HIS114 4.3 40.6 1.0 C B:HIS114 4.4 41.7 1.0 NE2 A:HIS103 4.5 52.0 1.0 N B:HIS114 4.5 38.5 1.0 CD2 A:HIS103 4.5 51.0 1.0 CD2 B:HIS114 4.5 41.4 1.0 NE2 B:HIS114 4.6 41.6 1.0 N A:HIS103 4.8 43.5 1.0 CA A:HIS103 4.8 43.8 1.0 CB B:GLU117 4.9 55.2 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of the Staphylococcus Aureus PI258 Cadc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Staphylococcus Aureus PI258 Cadc within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn502 b:27.5 occ:0.80 OD2 B:ASP101 1.7 27.9 1.0 OE1 A:GLU117 1.9 37.6 1.0 ND1 B:HIS103 1.9 29.1 1.0 ND1 A:HIS114 2.1 38.2 1.0 CG B:ASP101 2.6 31.9 1.0 OD1 B:ASP101 2.8 35.5 1.0 CD A:GLU117 2.8 44.3 1.0 CE1 B:HIS103 2.9 30.3 1.0 OE2 A:GLU117 3.0 41.0 1.0 CE1 A:HIS114 3.0 38.0 1.0 CG B:HIS103 3.0 27.6 1.0 CG A:HIS114 3.2 35.0 1.0 CB B:HIS103 3.5 24.8 1.0 CB A:HIS114 3.6 36.5 1.0 CA A:HIS114 3.7 35.4 1.0 O B:HOH508 3.9 44.7 1.0 NE2 B:HIS103 4.0 31.0 1.0 CB B:ASP101 4.1 34.6 1.0 CD2 B:HIS103 4.1 27.0 1.0 CG A:GLU117 4.1 41.0 1.0 NE2 A:HIS114 4.2 37.6 1.0 CD2 A:HIS114 4.3 36.0 1.0 O A:HOH529 4.3 54.8 1.0 O A:HIS114 4.5 35.4 1.0 N A:HIS114 4.6 35.5 1.0 C A:HIS114 4.6 36.5 1.0 N B:HIS103 4.7 27.7 1.0 CA B:HIS103 4.7 26.5 1.0 O A:HOH525 4.9 59.8 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of the Staphylococcus Aureus PI258 Cadc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Staphylococcus Aureus PI258 Cadc within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn503 b:21.9 occ:0.50 OD2 C:ASP101 1.8 41.0 1.0 OE2 D:GLU117 2.0 44.5 1.0 ND1 C:HIS103 2.0 34.3 1.0 ND1 D:HIS114 2.1 42.0 1.0 CG C:ASP101 2.6 41.2 1.0 OD1 C:ASP101 2.8 38.3 1.0 CE1 C:HIS103 2.9 36.5 1.0 CE1 D:HIS114 3.0 40.2 1.0 CD D:GLU117 3.0 48.8 1.0 CG C:HIS103 3.1 33.3 1.0 CG D:HIS114 3.1 37.9 1.0 OE1 D:GLU117 3.4 51.4 1.0 CB C:HIS103 3.5 29.7 1.0 CB D:HIS114 3.5 38.1 1.0 CA D:HIS114 3.7 37.5 1.0 O C:HOH531 4.0 57.6 1.0 NE2 C:HIS103 4.0 39.3 1.0 CB C:ASP101 4.0 37.8 1.0 O C:HOH542 4.1 45.1 1.0 NE2 D:HIS114 4.1 40.5 1.0 CD2 C:HIS103 4.1 33.7 1.0 CD2 D:HIS114 4.2 40.8 1.0 CG D:GLU117 4.4 49.1 1.0 O D:HIS114 4.5 40.5 1.0 N C:HIS103 4.6 30.2 1.0 C D:HIS114 4.6 38.2 1.0 CA C:HIS103 4.7 30.2 1.0 N D:HIS114 4.8 37.7 1.0 CB D:GLU117 4.8 45.1 1.0

J.Ye, A.Kandegedara, P.Martin, B.P.Rosen. Crystal Structure of the Staphylococcus Aureus PI258 Cadc Cd(II)/Pb(II)/Zn(II)-Responsive Repressor J.Bacteriol. V. 187 4214 2005.
ISSN: ISSN 0021-9193
PubMed: 15937183
DOI: 10.1128/JB.187.12.4214-4221.2005