Atomistry » Zinc » PDB 1pvw-1q65 » 1q3z
Atomistry »
  Zinc »
    PDB 1pvw-1q65 »
      1q3z »

Zinc in PDB 1q3z: uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1.

Zinc Binding Sites:

The binding sites of Zinc atom in the uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1. (pdb code 1q3z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1., PDB code: 1q3z:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1q3z

Go back to Zinc Binding Sites List in 1q3z
Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1

b:0.0
occ:1.00
HB3 A:LYS20 2.0 0.0 1.0
HB3 A:CYS18 2.2 0.0 1.0
ND1 A:HIS23 2.2 0.0 1.0
H A:LYS20 2.3 0.0 1.0
NE2 A:HIS28 2.3 0.0 1.0
SG A:CYS18 2.5 0.0 1.0
SG A:CYS15 2.6 0.0 1.0
HB2 A:LYS20 2.7 0.0 1.0
CB A:CYS18 2.8 0.0 1.0
CB A:LYS20 2.8 0.0 1.0
H A:GLY19 3.1 0.0 1.0
N A:LYS20 3.1 0.0 1.0
HB2 A:HIS23 3.2 0.0 1.0
CG A:HIS23 3.2 0.0 1.0
CE1 A:HIS23 3.3 0.0 1.0
HB2 A:CYS18 3.3 0.0 1.0
HB3 A:HIS23 3.3 0.0 1.0
CE1 A:HIS28 3.4 0.0 1.0
CD2 A:HIS28 3.4 0.0 1.0
HZ2 A:LYS20 3.4 0.0 1.0
CB A:HIS23 3.4 0.0 1.0
HE1 A:HIS23 3.5 0.0 1.0
HD2 A:HIS28 3.5 0.0 1.0
HE1 A:HIS28 3.5 0.0 1.0
CA A:LYS20 3.6 0.0 1.0
N A:GLY19 3.7 0.0 1.0
HD2 A:LYS20 3.8 0.0 1.0
CG A:LYS20 4.0 0.0 1.0
CA A:CYS18 4.0 0.0 1.0
C A:CYS18 4.2 0.0 1.0
CB A:CYS15 4.2 0.0 1.0
HG2 A:LYS20 4.2 0.0 1.0
C A:GLY19 4.3 0.0 1.0
CD A:LYS20 4.3 0.0 1.0
O A:LYS20 4.4 0.0 1.0
CD2 A:HIS23 4.4 0.0 1.0
NZ A:LYS20 4.4 0.0 1.0
NE2 A:HIS23 4.4 0.0 1.0
HA A:LYS20 4.4 0.0 1.0
C A:LYS20 4.4 0.0 1.0
HB3 A:CYS15 4.4 0.0 1.0
H A:CYS15 4.4 0.0 1.0
ND1 A:HIS28 4.5 0.0 1.0
CG A:HIS28 4.5 0.0 1.0
HB2 A:CYS15 4.6 0.0 1.0
CA A:GLY19 4.6 0.0 1.0
H A:CYS18 4.6 0.0 1.0
HZ1 A:LYS20 4.7 0.0 1.0
HE3 A:LYS20 4.7 0.0 1.0
HA A:CYS18 4.8 0.0 1.0
N A:CYS18 4.8 0.0 1.0
CE A:LYS20 4.8 0.0 1.0
HG3 A:LYS20 4.9 0.0 1.0
O A:CYS15 5.0 0.0 1.0
CA A:HIS23 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 1q3z

Go back to Zinc Binding Sites List in 1q3z
Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the CYS28HIS Mutant (E Form) of the Nucleocapsid Protein NCP7 of Hiv-1. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2

b:0.0
occ:1.00
HB3 A:CYS39 2.0 0.0 1.0
HB2 A:LYS41 2.4 0.0 1.0
NE2 A:HIS44 2.4 0.0 1.0
HD2 A:HIS44 2.5 0.0 1.0
SG A:CYS49 2.6 0.0 1.0
CB A:CYS39 2.6 0.0 1.0
SG A:CYS36 2.6 0.0 1.0
SG A:CYS39 2.6 0.0 1.0
CD2 A:HIS44 2.7 0.0 1.0
HB2 A:CYS36 3.0 0.0 1.0
HB2 A:CYS39 3.0 0.0 1.0
CB A:CYS36 3.1 0.0 1.0
HB2 A:CYS49 3.1 0.0 1.0
HB3 A:CYS36 3.1 0.0 1.0
CB A:LYS41 3.3 0.0 1.0
HB3 A:LYS41 3.3 0.0 1.0
H A:LYS41 3.4 0.0 1.0
CB A:CYS49 3.5 0.0 1.0
CE1 A:HIS44 3.7 0.0 1.0
HG3 A:LYS41 3.9 0.0 1.0
CA A:CYS39 4.0 0.0 1.0
H A:CYS39 4.0 0.0 1.0
CG A:HIS44 4.1 0.0 1.0
N A:LYS41 4.1 0.0 1.0
CG A:LYS41 4.2 0.0 1.0
HA A:CYS49 4.2 0.0 1.0
HB3 A:CYS49 4.2 0.0 1.0
HE1 A:HIS44 4.3 0.0 1.0
H A:GLY40 4.3 0.0 1.0
CA A:LYS41 4.3 0.0 1.0
HG3 A:GLU51 4.4 0.0 1.0
N A:CYS39 4.5 0.0 1.0
CA A:CYS49 4.5 0.0 1.0
C A:CYS39 4.5 0.0 1.0
ND1 A:HIS44 4.5 0.0 1.0
N A:GLY40 4.5 0.0 1.0
CA A:CYS36 4.6 0.0 1.0
H A:CYS36 4.7 0.0 1.0
O A:GLN45 4.7 0.0 1.0
HG3 A:LYS38 4.7 0.0 1.0
HA A:CYS39 4.8 0.0 1.0
HG2 A:LYS38 4.8 0.0 1.0
HB2 A:GLU51 4.8 0.0 1.0
HG2 A:LYS41 4.9 0.0 1.0
N A:CYS36 5.0 0.0 1.0
O A:LYS41 5.0 0.0 1.0

Reference:

S.Ramboarina, S.Druillennec, N.Morellet, S.Bouaziz, B.P.Roques. Target Specificity of Human Immunodeficiency Virus Type 1 NCP7 Requires An Intact Conformation of Its Cchc N-Terminal Zinc Finger. J.Virol. V. 78 6682 2004.
ISSN: ISSN 0022-538X
PubMed: 15163759
DOI: 10.1128/JVI.78.12.6682-6687.2004
Page generated: Wed Oct 16 18:02:19 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy