Zinc in PDB 1nzj: Crystal Structure and Activity Studies of Escherichia Coli Yadb Orf

The structure of Crystal Structure and Activity Studies of Escherichia Coli Yadb Orf, PDB code: 1nzj was solved by V.Campanacci, D.Y.Kern, H.D.Becker, S.Spinelli, C.Valencia, R.Vincentelli, F.Pagot, C.Bignon, R.Giege, C.Cambillau, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.25 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.920, 39.300, 69.150, 90.00, 116.19, 90.00
R / Rfree (%)	14.6 / 17

The binding sites of Zinc atom in the Crystal Structure and Activity Studies of Escherichia Coli Yadb Orf (pdb code 1nzj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure and Activity Studies of Escherichia Coli Yadb Orf, PDB code: 1nzj:

Zinc binding site 1 out of 1 in the Crystal Structure and Activity Studies of Escherichia Coli Yadb Orf


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure and Activity Studies of Escherichia Coli Yadb Orf within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn700 b:12.6 occ:1.00 OH A:TYR115 2.1 9.2 1.0 SG A:CYS119 2.3 10.7 1.0 SG A:CYS101 2.3 9.8 1.0 SG A:CYS103 2.4 11.2 1.0 CZ A:TYR115 3.0 8.2 1.0 CE1 A:TYR115 3.3 8.9 1.0 CB A:CYS119 3.3 10.8 1.0 CB A:CYS101 3.3 9.6 1.0 CB A:CYS103 3.3 12.2 1.0 N A:CYS103 3.6 12.0 1.0 CA A:CYS101 3.7 9.6 1.0 N A:CYS119 3.8 11.4 1.0 N A:THR102 3.9 11.0 1.0 CA A:CYS103 4.1 12.5 1.0 C A:CYS101 4.1 10.0 1.0 CA A:CYS119 4.1 11.2 1.0 CE2 A:TYR115 4.2 8.7 1.0 CB A:HIS118 4.2 11.6 1.0 O A:HOH485 4.2 24.3 1.0 ND1 A:HIS118 4.2 15.1 1.0 CD1 A:TYR115 4.6 8.8 1.0 C A:THR102 4.7 12.3 1.0 CG A:HIS118 4.7 12.8 1.0 C A:HIS118 4.7 11.3 1.0 CA A:HIS118 4.9 11.2 1.0 CA A:THR102 4.9 11.8 1.0 NE A:ARG132 4.9 10.4 1.0

V.Campanacci, D.Y.Dubois, H.D.Becker, D.Kern, S.Spinelli, C.Valencia, F.Pagot, A.Salomoni, S.Grisel, R.Vincentelli, C.Bignon, J.Lapointe, R.Giege, C.Cambillau. The Escherichia Coli Yadb Gene Product Reveals A Novel Aminoacyl-Trna Synthetase Like Activity. J.Mol.Biol. V. 337 273 2004.
ISSN: ISSN 0022-2836
PubMed: 15003446
DOI: 10.1016/J.JMB.2004.01.027