Zinc in PDB 1mrd: Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes

The structure of Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes, PDB code: 1mrd was solved by P.R.Pokkuluri, M.Cygler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.200, 75.300, 105.200, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / n/a

The binding sites of Zinc atom in the Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes (pdb code 1mrd). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes, PDB code: 1mrd:

Zinc binding site 1 out of 1 in the Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes within 5.0Å range: probe atom residue distance (Å) B Occ L:Zn600 b:28.6 occ:1.00 N1 L:IMD902 1.8 25.7 1.0 OD2 L:ASP151 1.9 25.4 1.0 ND1 L:HIS189 1.9 26.1 1.0 C2 L:IMD902 2.7 25.9 1.0 CE1 L:HIS189 2.9 26.2 1.0 C5 L:IMD902 2.9 26.8 1.0 CG L:ASP151 3.0 22.2 1.0 CG L:HIS189 3.0 25.7 1.0 CB L:HIS189 3.5 28.4 1.0 CB L:ASP151 3.5 23.8 1.0 CA L:HIS189 3.8 29.1 1.0 N3 L:IMD902 3.9 27.4 1.0 C4 L:IMD902 4.0 27.8 1.0 NE2 L:HIS189 4.0 24.8 1.0 OD1 L:ASP151 4.0 21.2 1.0 CD2 L:HIS189 4.1 24.1 1.0 O L:ARG188 4.2 33.7 1.0 N L:HIS189 4.7 29.0 1.0 N L:ASN190 4.7 33.2 1.0 C L:ARG188 4.8 31.4 1.0 O L:ILE150 4.8 26.9 1.0 CG2 L:ILE150 4.8 22.9 1.0 C L:HIS189 4.9 30.6 1.0 CA L:ASP151 4.9 21.9 1.0

P.R.Pokkuluri, F.Bouthillier, Y.Li, A.Kuderova, J.Lee, M.Cygler. Preparation, Characterization and Crystallization of An Antibody Fab Fragment That Recognizes Rna. Crystal Structures of Native Fab and Three Fab-Mononucleotide Complexes. J.Mol.Biol. V. 243 283 1994.
ISSN: ISSN 0022-2836
PubMed: 7523684
DOI: 10.1006/JMBI.1994.1654