Zinc in PDB 1lhv: Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel

The structure of Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel, PDB code: 1lhv was solved by I.Grishkovskaya, G.V.Avvakumov, G.L.Hammond, M.G.Catalano, Y.A.Muller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.65 / 2.00
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	103.980, 103.980, 83.930, 90.00, 90.00, 120.00
R / Rfree (%)	21.5 / 26.4

The structure of Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Zinc atom in the Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel (pdb code 1lhv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel, PDB code: 1lhv:

Zinc binding site 1 out of 1 in the Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the N-Terminal Lg-Domain of Shbg in Complex with Norgestrel within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:37.5 occ:0.50 O A:HOH523 1.9 42.2 1.0 NE2 A:HIS136 2.0 60.1 1.0 NE2 A:HIS83 2.3 49.2 1.0 OD2 A:ASP65 2.3 41.1 1.0 CD2 A:HIS136 2.8 59.1 1.0 CD2 A:HIS83 3.1 48.4 1.0 CE1 A:HIS136 3.2 59.2 1.0 CE1 A:HIS83 3.3 48.7 1.0 O A:HOH562 3.4 57.0 1.0 CG A:ASP65 3.4 43.3 1.0 O A:HOH550 3.8 62.6 1.0 CG A:HIS136 4.0 59.2 1.0 CB A:ASP65 4.0 41.4 1.0 ND1 A:HIS136 4.2 58.8 1.0 CG A:HIS83 4.2 47.6 1.0 ND1 A:HIS83 4.3 47.5 1.0 OD1 A:ASP64 4.4 57.5 1.0 OD1 A:ASP65 4.5 45.1 1.0 OG1 A:THR60 4.6 37.1 1.0 O A:ASP64 4.9 47.6 1.0

I.Grishkovskaya, G.V.Avvakumov, G.L.Hammond, M.G.Catalano, Y.A.Muller. Steroid Ligands Bind Human Sex Hormone-Binding Globulin in Specific Orientations and Produce Distinct Changes in Protein Conformation J.Biol.Chem. V. 277 32086 2002.
ISSN: ISSN 0021-9258
PubMed: 12065592
DOI: 10.1074/JBC.M203999200