Atomistry » Zinc » PDB 1jao-1joe » 1jd4
Atomistry »
  Zinc »
    PDB 1jao-1joe »
      1jd4 »

Zinc in PDB 1jd4: Crystal Structure of DIAP1-BIR2

Protein crystallography data

The structure of Crystal Structure of DIAP1-BIR2, PDB code: 1jd4 was solved by J.W.Wu, A.E.Cocina, J.Chai, B.A.Hay, Y.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 96.100, 96.100, 59.300, 90.00, 90.00, 90.00
R / Rfree (%) 23.6 / 28.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of DIAP1-BIR2 (pdb code 1jd4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of DIAP1-BIR2, PDB code: 1jd4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1jd4

Go back to Zinc Binding Sites List in 1jd4
Zinc binding site 1 out of 2 in the Crystal Structure of DIAP1-BIR2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of DIAP1-BIR2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:37.1
occ:1.00
SG A:CYS266 2.3 26.3 1.0
SG A:CYS290 2.4 28.8 1.0
SG A:CYS263 2.4 22.2 1.0
NE2 A:HIS283 2.5 20.0 1.0
CB A:CYS290 3.1 25.3 1.0
CB A:CYS263 3.1 26.4 1.0
CB A:CYS266 3.2 27.5 1.0
CD2 A:HIS283 3.4 22.3 1.0
CE1 A:HIS283 3.5 24.7 1.0
N A:CYS266 3.7 21.1 1.0
OG A:SER265 3.7 47.8 1.0
CA A:CYS266 4.0 17.1 1.0
CD1 A:LEU287 4.2 22.6 1.0
CA A:CYS290 4.4 25.5 1.0
CB A:LEU287 4.4 24.1 1.0
CG A:HIS283 4.5 31.3 1.0
ND1 A:HIS283 4.6 29.9 1.0
CA A:CYS263 4.6 28.5 1.0
CG2 A:VAL293 4.7 34.5 1.0
C A:CYS266 4.8 23.6 1.0
C A:SER265 4.8 24.0 1.0
CB A:SER265 4.9 29.5 1.0
CG A:LEU287 5.0 26.9 1.0
O A:LEU287 5.0 15.5 1.0

Zinc binding site 2 out of 2 in 1jd4

Go back to Zinc Binding Sites List in 1jd4
Zinc binding site 2 out of 2 in the Crystal Structure of DIAP1-BIR2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of DIAP1-BIR2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:40.7
occ:1.00
SG B:CYS266 2.1 33.3 1.0
SG B:CYS290 2.3 30.2 1.0
NE2 B:HIS283 2.3 19.8 1.0
SG B:CYS263 2.5 25.0 1.0
CB B:CYS290 3.1 20.8 1.0
CD2 B:HIS283 3.1 22.8 1.0
CB B:CYS263 3.2 31.5 1.0
CE1 B:HIS283 3.3 24.2 1.0
CB B:CYS266 3.4 32.7 1.0
OG B:SER265 3.8 46.8 1.0
N B:CYS266 3.9 31.0 1.0
CD1 B:LEU287 4.1 30.1 1.0
CA B:CYS266 4.2 29.5 1.0
CB B:LEU287 4.3 31.1 1.0
CG B:HIS283 4.3 31.8 1.0
ND1 B:HIS283 4.4 29.1 1.0
CA B:CYS290 4.4 21.3 1.0
CG2 B:VAL293 4.6 26.7 1.0
CA B:CYS263 4.7 31.1 1.0
O B:LEU287 4.8 29.9 1.0
CG B:LEU287 4.9 31.6 1.0

Reference:

J.W.Wu, A.E.Cocina, J.Chai, B.A.Hay, Y.Shi. Structural Analysis of A Functional DIAP1 Fragment Bound to Grim and Hid Peptides. Mol.Cell V. 8 95 2001.
ISSN: ISSN 1097-2765
PubMed: 11511363
DOI: 10.1016/S1097-2765(01)00282-9
Page generated: Sun Oct 13 03:31:20 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy