Zinc in PDB 1f6u: uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition

The binding sites of Zinc atom in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition (pdb code 1f6u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition, PDB code: 1f6u:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn128 b:0.0 occ:1.00 NE2 A:HIS23 2.1 0.0 1.0 SG A:CYS28 2.3 0.0 1.0 SG A:CYS18 2.4 0.0 1.0 SG A:CYS15 2.4 0.0 1.0 HB2 A:CYS28 2.9 0.0 1.0 CD2 A:HIS23 3.0 0.0 1.0 HB3 A:CYS18 3.1 0.0 1.0 CE1 A:HIS23 3.1 0.0 1.0 CB A:CYS28 3.1 0.0 1.0 HB2 A:CYS15 3.1 0.0 1.0 CB A:CYS15 3.2 0.0 1.0 HA A:CYS28 3.2 0.0 1.0 HD2 A:HIS23 3.2 0.0 1.0 H A:CYS18 3.2 0.0 1.0 HB3 A:CYS15 3.2 0.0 1.0 CB A:CYS18 3.3 0.0 1.0 HE1 A:HIS23 3.4 0.0 1.0 HD21 A:ASN17 3.4 0.0 1.0 CA A:CYS28 3.7 0.0 1.0 HA A:ALA25 3.7 0.0 1.0 HB3 A:ASN17 3.8 0.0 1.0 H A:ARG29 3.9 0.0 1.0 N A:CYS18 4.0 0.0 1.0 HB3 A:CYS28 4.0 0.0 1.0 CG A:HIS23 4.1 0.0 1.0 ND1 A:HIS23 4.1 0.0 1.0 HB2 A:CYS18 4.1 0.0 1.0 CA A:CYS18 4.3 0.0 1.0 ND2 A:ASN17 4.3 0.0 1.0 H A:GLY19 4.4 0.0 1.0 HB3 A:LYS20 4.5 0.0 1.0 N A:ARG29 4.6 0.0 1.0 HB1 A:ALA30 4.6 0.0 1.0 N A:ALA25 4.6 0.0 1.0 C A:ILE24 4.6 0.0 1.0 H A:ASN17 4.6 0.0 1.0 CA A:CYS15 4.6 0.0 1.0 O A:ILE24 4.6 0.0 1.0 CA A:ALA25 4.6 0.0 1.0 C A:CYS28 4.7 0.0 1.0 H A:ALA30 4.7 0.0 1.0 HB2 A:LYS20 4.7 0.0 1.0 HD22 A:ASN17 4.8 0.0 1.0 CB A:ASN17 4.8 0.0 1.0 N A:CYS28 4.8 0.0 1.0 H A:LYS20 4.8 0.0 1.0 HA A:CYS15 4.9 0.0 1.0 HG2 A:ARG29 4.9 0.0 1.0 HA A:ILE24 4.9 0.0 1.0 N A:GLY19 5.0 0.0 1.0 H A:ALA25 5.0 0.0 1.0 HB2 A:ALA25 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn149 b:0.0 occ:1.00 NE2 A:HIS44 2.1 0.0 1.0 SG A:CYS49 2.3 0.0 1.0 SG A:CYS36 2.3 0.0 1.0 SG A:CYS39 2.4 0.0 1.0 HA A:CYS49 2.6 0.0 1.0 CE1 A:HIS44 2.9 0.0 1.0 HB3 A:CYS36 3.0 0.0 1.0 CB A:CYS36 3.0 0.0 1.0 HB2 A:CYS36 3.0 0.0 1.0 HE1 A:HIS44 3.1 0.0 1.0 CB A:CYS49 3.1 0.0 1.0 HB2 A:CYS49 3.1 0.0 1.0 CD2 A:HIS44 3.1 0.0 1.0 HB3 A:CYS39 3.2 0.0 1.0 H A:THR50 3.3 0.0 1.0 CA A:CYS49 3.3 0.0 1.0 CB A:CYS39 3.4 0.0 1.0 HD2 A:HIS44 3.5 0.0 1.0 H A:CYS39 3.6 0.0 1.0 HB3 A:LYS38 4.0 0.0 1.0 HA A:MET46 4.0 0.0 1.0 HB2 A:LYS41 4.1 0.0 1.0 N A:THR50 4.1 0.0 1.0 ND1 A:HIS44 4.1 0.0 1.0 HB3 A:CYS49 4.1 0.0 1.0 HB2 A:CYS39 4.1 0.0 1.0 CG A:HIS44 4.2 0.0 1.0 N A:CYS39 4.2 0.0 1.0 H A:GLU51 4.2 0.0 1.0 C A:CYS49 4.3 0.0 1.0 H A:LYS41 4.3 0.0 1.0 O A:GLN45 4.4 0.0 1.0 H A:GLY40 4.4 0.0 1.0 CA A:CYS39 4.4 0.0 1.0 N A:CYS49 4.4 0.0 1.0 CA A:CYS36 4.5 0.0 1.0 HG21 A:THR50 4.6 0.0 1.0 HD2 A:LYS38 4.6 0.0 1.0 H A:LYS38 4.6 0.0 1.0 HA A:CYS36 4.8 0.0 1.0 OG1 A:THR50 4.8 0.0 1.0 C A:GLN45 4.9 0.0 1.0 H A:CYS49 4.9 0.0 1.0 HD2 A:LYS41 4.9 0.0 1.0 HB3 A:LYS41 4.9 0.0 1.0 HD1 A:HIS44 4.9 0.0 1.0 HG1 A:THR50 5.0 0.0 1.0 CB A:LYS41 5.0 0.0 1.0

G.K.Amarasinghe, R.N.De Guzman, R.B.Turner, K.J.Chancellor, Z.R.Wu, M.F.Summers. uc(Nmr) Structure of the Hiv-1 Nucleocapsid Protein Bound to Stem-Loop SL2 of the Psi-Rna Packaging Signal. Implications For Genome Recognition. J.Mol.Biol. V. 301 491 2000.
ISSN: ISSN 0022-2836
PubMed: 10926523
DOI: 10.1006/JMBI.2000.3979