Zinc in PDB 1f3h: X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin

The structure of X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin, PDB code: 1f3h was solved by M.A.Verdecia, H.Huang, E.Dutil, T.Hunter, J.P.Noel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.12 / 2.58
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	114.040, 71.450, 86.630, 90.00, 133.37, 90.00
R / Rfree (%)	22.8 / 28.7

The binding sites of Zinc atom in the X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin (pdb code 1f3h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin, PDB code: 1f3h:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn341 b:82.6 occ:1.00 SG A:CYS60 1.4 88.3 1.0 SG A:CYS57 1.9 56.3 1.0 NE2 A:HIS77 1.9 97.7 1.0 SG A:CYS84 2.2 68.7 1.0 CE1 A:HIS77 2.4 69.0 1.0 CB A:CYS57 2.9 51.1 1.0 CD2 A:HIS77 3.2 62.8 1.0 CB A:CYS84 3.2 63.9 1.0 CB A:CYS60 3.4 65.9 1.0 ND1 A:HIS77 3.6 88.2 1.0 CG A:HIS77 4.0 88.6 1.0 O A:CYS60 4.0 78.2 1.0 CD2 A:LEU87 4.2 53.6 1.0 CA A:CYS57 4.2 54.0 1.0 N A:CYS60 4.2 0.2 1.0 CA A:CYS60 4.4 65.9 1.0 OG A:SER81 4.5 71.1 1.0 CA A:CYS84 4.6 94.5 1.0 C A:CYS60 4.7 66.3 1.0 CB A:PHE86 4.7 42.4 1.0 CB A:PHE59 4.8 52.9 1.0 CB A:SER81 4.9 59.1 1.0 CG A:LEU87 4.9 88.7 1.0 C A:CYS57 4.9 52.1 1.0

Zinc binding site 2 out of 2 in the X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Crystal Structure of the Human Anti-Apoptotic Protein Survivin within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn342 b:79.5 occ:1.00 SG B:CYS57 2.1 70.9 1.0 SG B:CYS84 2.1 85.8 1.0 SG B:CYS60 2.1 60.3 1.0 NE2 B:HIS77 2.6 79.2 1.0 CB B:CYS60 2.8 89.8 1.0 CE1 B:HIS77 2.8 73.3 1.0 CB B:CYS84 2.8 0.2 1.0 N B:CYS60 3.7 77.4 1.0 CB B:CYS57 3.8 50.6 1.0 CA B:CYS60 3.8 84.6 1.0 CD2 B:HIS77 3.9 68.8 1.0 ND1 B:HIS77 4.1 69.0 1.0 CA B:CYS84 4.1 80.6 1.0 OG B:SER81 4.4 81.7 1.0 CB B:PHE86 4.5 69.9 1.0 CB B:PHE59 4.6 61.2 1.0 CG B:HIS77 4.7 95.6 1.0 CB B:SER81 4.8 96.9 1.0 C B:CYS84 4.8 86.8 1.0 C B:PHE59 4.8 79.6 1.0 C B:CYS60 4.8 74.4 1.0 CD1 B:LEU87 4.9 72.9 1.0

M.A.Verdecia, H.Huang, E.Dutil, D.A.Kaiser, T.Hunter, J.P.Noel. Structure of the Human Anti-Apoptotic Protein Survivin Reveals A Dimeric Arrangement. Nat.Struct.Biol. V. 7 602 2000.
ISSN: ISSN 1072-8368
PubMed: 10876248
DOI: 10.1038/77929