Zinc in PDB 1f1m: Crystal Structure of Outer Surface Protein C (Ospc)

The structure of Crystal Structure of Outer Surface Protein C (Ospc), PDB code: 1f1m was solved by D.Kumaran, S.Eswaramoorthy, J.J.Dunn, S.Swaminathan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	66.323, 46.252, 111.784, 90.00, 99.08, 90.00
R / Rfree (%)	20.1 / 23.5

The binding sites of Zinc atom in the Crystal Structure of Outer Surface Protein C (Ospc) (pdb code 1f1m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of Outer Surface Protein C (Ospc), PDB code: 1f1m:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of Outer Surface Protein C (Ospc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Outer Surface Protein C (Ospc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:19.4 occ:1.00 O A:HOH959 1.8 15.3 1.0 O A:HOH960 1.9 18.9 1.0 NE2 A:HIS92 2.2 14.8 1.0 O A:HOH896 2.3 23.6 1.0 O A:HOH809 2.3 21.5 1.0 CD2 A:HIS92 3.0 17.4 1.0 CE1 A:HIS92 3.4 17.9 1.0 OE2 A:GLU89 3.9 37.6 1.0 O A:ALA90 4.1 22.7 1.0 O B:HOH965 4.2 40.4 1.0 CG A:HIS92 4.2 15.2 1.0 ND1 A:HIS92 4.4 15.1 1.0 O A:HOH922 4.4 25.4 1.0 O A:HOH850 4.4 20.7 1.0 CD A:GLU89 4.9 35.2 1.0 CG B:GLU148 4.9 20.9 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of Outer Surface Protein C (Ospc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Outer Surface Protein C (Ospc) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn802 b:27.5 occ:1.00 NE2 B:HIS142 2.1 20.6 1.0 O B:HOH968 2.3 40.6 1.0 O B:HOH983 2.4 26.6 1.0 CD2 B:HIS142 3.1 20.6 1.0 CE1 B:HIS142 3.1 21.2 1.0 ND1 B:HIS142 4.2 20.4 1.0 CG B:HIS142 4.2 21.3 1.0 O B:HOH812 4.3 19.5 1.0 CB A:SER82 4.6 34.4 1.0 OG1 B:THR143 4.6 25.4 1.0 O B:GLY140 4.7 22.0 1.0 OG A:SER82 4.8 39.1 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of Outer Surface Protein C (Ospc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Outer Surface Protein C (Ospc) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn803 b:35.5 occ:1.00 NE2 B:HIS92 2.2 18.1 1.0 O B:HOH984 2.2 31.8 1.0 O B:HOH967 2.3 29.1 1.0 O B:HOH912 2.3 23.4 1.0 O B:HOH913 2.4 35.3 1.0 CD2 B:HIS92 3.0 16.9 1.0 CE1 B:HIS92 3.3 17.2 1.0 O B:ALA90 3.9 17.4 1.0 CG B:HIS92 4.2 17.5 1.0 ND1 B:HIS92 4.3 16.9 1.0 O B:HOH815 4.4 19.3 1.0 O B:HOH948 4.4 33.1 1.0 O B:HOH975 4.5 49.5 1.0 OE1 B:GLU89 4.7 36.4 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of Outer Surface Protein C (Ospc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Outer Surface Protein C (Ospc) within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn804 b:33.3 occ:1.00 NE2 C:HIS92 2.1 12.8 1.0 O C:HOH859 2.3 36.2 1.0 O C:HOH822 2.3 43.7 1.0 CD2 C:HIS92 2.9 12.6 1.0 CE1 C:HIS92 3.3 15.2 1.0 OE2 C:GLU89 3.9 36.0 1.0 CG C:HIS92 4.1 13.3 1.0 O C:ALA90 4.2 19.9 1.0 ND1 C:HIS92 4.3 13.2 1.0 O D:HOH861 4.6 23.2 1.0 O C:HOH843 4.7 40.2 1.0 CG D:GLU148 4.8 20.3 1.0 O C:HOH915 4.9 36.7 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of Outer Surface Protein C (Ospc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Outer Surface Protein C (Ospc) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn805 b:29.9 occ:1.00 NE2 D:HIS142 2.1 15.4 1.0 O D:HOH957 2.3 34.4 1.0 CE1 D:HIS142 2.9 17.0 1.0 CD2 D:HIS142 3.2 18.6 1.0 O C:HOH871 3.3 34.2 1.0 O D:HOH816 3.8 12.3 1.0 ND1 D:HIS142 4.1 16.8 1.0 CG D:HIS142 4.2 17.6 1.0 O D:GLY140 4.5 13.3 1.0 OG1 D:THR143 4.6 16.6 1.0 OG C:SER82 4.7 35.8 1.0 CB C:SER82 4.9 25.1 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of Outer Surface Protein C (Ospc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Outer Surface Protein C (Ospc) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn806 b:36.7 occ:1.00 O D:HOH933 2.3 34.0 1.0 NE2 D:HIS92 2.3 15.3 1.0 O D:HOH920 2.4 30.6 1.0 O D:HOH926 2.4 21.6 1.0 CD2 D:HIS92 3.1 16.0 1.0 CE1 D:HIS92 3.5 17.4 1.0 OE2 D:GLU89 3.8 31.7 1.0 O D:ALA90 4.0 14.1 1.0 O C:HOH861 4.1 34.5 1.0 CG D:HIS92 4.3 15.8 1.0 O D:HOH818 4.4 20.2 1.0 ND1 D:HIS92 4.5 18.3 1.0 O D:HOH871 4.8 36.9 1.0

D.Kumaran, S.Eswaramoorthy, B.J.Luft, S.Koide, J.J.Dunn, C.L.Lawson, S.Swaminathan. Crystal Structure of Outer Surface Protein C (Ospc) From the Lyme Disease Spirochete, Borrelia Burgdorferi. Embo J. V. 20 971 2001.
ISSN: ISSN 0261-4189
PubMed: 11230121
DOI: 10.1093/EMBOJ/20.5.971