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Zinc in PDB 1evr: The Structure of the Resorcinol/Insulin R6 Hexamer

Protein crystallography data

The structure of The Structure of the Resorcinol/Insulin R6 Hexamer, PDB code: 1evr was solved by G.D.Smith, E.Ciszak, L.A.Magrum, W.A.Pangborn, R.H.Blessing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.75 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.350, 61.926, 47.805, 90.00, 110.61, 90.00
R / Rfree (%) 17.9 / 21.8

Other elements in 1evr:

The structure of The Structure of the Resorcinol/Insulin R6 Hexamer also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of the Resorcinol/Insulin R6 Hexamer (pdb code 1evr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of the Resorcinol/Insulin R6 Hexamer, PDB code: 1evr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 1evr

Go back to Zinc Binding Sites List in 1evr
Zinc binding site 1 out of 2 in the The Structure of the Resorcinol/Insulin R6 Hexamer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of the Resorcinol/Insulin R6 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:24.7
occ:1.00
NE2 B:HIS10 2.0 23.8 1.0
NE2 J:HIS10 2.0 22.8 1.0
NE2 F:HIS10 2.0 23.9 1.0
CL J:CL303 2.2 24.8 1.0
CE1 J:HIS10 3.0 24.4 1.0
CE1 F:HIS10 3.0 27.6 1.0
CE1 B:HIS10 3.0 27.1 1.0
CD2 B:HIS10 3.0 21.0 1.0
CD2 F:HIS10 3.0 20.6 1.0
CD2 J:HIS10 3.1 21.2 1.0
ND1 J:HIS10 4.1 27.0 1.0
ND1 F:HIS10 4.1 23.1 1.0
ND1 B:HIS10 4.1 26.3 1.0
CG B:HIS10 4.2 23.1 1.0
CG J:HIS10 4.2 24.6 1.0
CG F:HIS10 4.2 25.1 1.0
O F:HOH49 4.6 35.2 0.5
O B:LEU6 4.8 22.7 1.0
O F:LEU6 4.9 24.6 1.0
O J:LEU6 4.9 23.3 1.0
CB J:LEU6 5.0 27.4 1.0
CB B:LEU6 5.0 22.7 1.0

Zinc binding site 2 out of 2 in 1evr

Go back to Zinc Binding Sites List in 1evr
Zinc binding site 2 out of 2 in the The Structure of the Resorcinol/Insulin R6 Hexamer


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of the Resorcinol/Insulin R6 Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn302

b:25.7
occ:1.00
NE2 H:HIS10 2.0 23.1 1.0
NE2 D:HIS10 2.0 23.9 1.0
NE2 L:HIS10 2.0 25.4 1.0
CL D:CL304 2.2 25.9 1.0
CE1 D:HIS10 2.9 24.7 1.0
CE1 H:HIS10 3.0 26.7 1.0
CD2 H:HIS10 3.0 22.6 1.0
CE1 L:HIS10 3.0 27.0 1.0
CD2 L:HIS10 3.1 24.2 1.0
CD2 D:HIS10 3.1 20.2 1.0
ND1 D:HIS10 4.1 26.8 1.0
ND1 H:HIS10 4.1 25.0 1.0
CG H:HIS10 4.2 24.5 1.0
ND1 L:HIS10 4.2 28.3 1.0
CG D:HIS10 4.2 23.2 1.0
CG L:HIS10 4.2 27.9 1.0
O L:HOH166 4.7 42.0 0.5
O D:LEU6 4.8 28.2 1.0
O L:LEU6 4.8 23.4 1.0
O H:LEU6 4.9 26.2 1.0
CB L:LEU6 4.9 27.5 1.0

Reference:

G.D.Smith, E.Ciszak, L.A.Magrum, W.A.Pangborn, R.H.Blessing. R6 Hexameric Insulin Complexed with M-Cresol or Resorcinol. Acta Crystallogr.,Sect.D V. 56 1541 2000.
ISSN: ISSN 0907-4449
PubMed: 11092919
DOI: 10.1107/S0907444900012749
Page generated: Sun Oct 13 00:28:41 2024

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