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Zinc in PDB, part 445 (files: 17761-17800), PDB 7g4c-7g5g

Experimental structures of coordination spheres of Zinc (Zn) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Zinc atoms. PDB files: 17761-17800 (PDB 7g4c-7g5g).
  1. 7g4c (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2R,6S,7S)-9-(1-Ethyl-4-Propan-2-Yloxyindole-6-Carbonyl)- 4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2)C(=O) C1CC2C(C(C1)Oc(C)C)C=CN2CC with IC50=0.0412147 Microm
    Other atoms: Na (3); Ca (1); Cl (1);
  2. 7g4d (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with Rac-(E)-1-[Rac-(1R, 2S,6R,7S)-9-(1H-Benzotriazole-5-Carbonyl)-4,9-Diazatricyclo[5.3.0.02, 6]Decan-4-Yl]-3-[4-(Trifluoromethoxy)Phenyl]Prop-2-En-1-One, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)/C=C/C1CCC(CC1)Oc(F)(F)F with IC50=0.00827722 Microm
    Other atoms: F (3); Ca (1); Cl (4);
  3. 7g4e (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (5E)-5-[(4-Tert- Butylphenyl)Methylidene]-2-Pyrrolidin-1-Yl-1,3-Thiazol-4-One, I.E. Smiles N1=C(S/C(=C/C2CCC(C(C)(C)C)CC2)/C1=O)N1CCCC1 with IC50=0.210793 Microm
    Other atoms: Cl (1); Ca (1);
  4. 7g4f (Zn: 2) - Crystal Structure of Rat Autotaxin in Complex with (E)-1-[(3AR,6AR)-5- (1H-Benzotriazole-5-Carbonyl)-1,3,3A,4,6,6A-Hexahydropyrrolo[3,4- C]Pyrrol-2-Yl]-3-[4-(Trifluoromethoxy)Phenyl]Prop-2-En-1-One, I.E. Smiles C1N(C[C@H]2[C@H]1CN(C2)C(=O)C1CCC2C(C1)N=NN2)C(=O) /C=C/C1CCC(CC1)Oc(F)(F)F with IC50=0.00118848 Microm
    Other atoms: F (3); Ca (2);
  5. 7g4g (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 7-[3-(4-Acetyl-3- Hydroxy-2-Propylphenoxy)-2-Hydroxypropoxy]-4-Oxo-8-Propylchromene-2- Carboxylic Acid, I.E. Smiles C12C(C(CCC1C(=O)C=C(O2)C(=O)O) Oc[C@@H](COC1C(C(C(CC1)C(=O)C)O)Ccc)O)Ccc with IC50=0.249971 Microm
    Other atoms: Ca (1); Cl (1); K (1);
  6. 7g4h (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with [2-Methyl-4- (Trifluoromethoxy)Phenyl]Methyl 2-(1,4,6,7-Tetrahydrotriazolo[4,5- C]Pyridine-5-Carbonyl)-6,7-Dihydro-4H-Pyrazolo[1,5-A]Pyrazine-5- Carboxylate, I.E. Smiles N1(CCN2C(=Cc(=N2)C(=O)N2CCC3=C(C2)N=NN3)C1) C(=O)OCC1C(Cc(CC1)Oc(F)(F)F)C with IC50=0.268343 Microm
    Other atoms: Ca (2); Na (1); Cl (1); K (1); F (6);
  7. 7g4i (Zn: 2) - Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(3AR,6AS)-5-[2-(3,5-Dichlorophenyl)Ethylsulfonyl]-3,3A,4,5,6, 6A-Hexahydro-1H-Cyclopenta[C]Pyrrol-2-Yl]Methanone, I.E. Smiles C1(CCC2C(C1)N=NN2)C(=O)N1C[C@@H]2[C@H](C1)C[C@H](C2)S(=O)(=O) CCC1CC(Cc(C1)Cl)Cl with IC50=0.129444 Microm
    Other atoms: Cl (2); Ca (1);
  8. 7g4j (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 4-[Rac-(E)-3-Oxo-3- [Rac-(3AR,8AS)-2-(1H-Benzotriazole-5-Carbonyl)-1,3,3A,4,5,7,8,8A- Octahydropyrrolo[3,4-D]Azepin-6-Yl]Prop-1-Enyl]Benzonitrile, I.E. Smiles C1C[C@@H]2[C@H](CCN1C(=O)/C=C/C1CCC(CC1)C#N)Cn(C2)C(=O) C1CCC2C(C1)N=NN2 with IC50=0.193037 Microm
    Other atoms: Ca (2); Cl (1);
  9. 7g4k (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 5-(4-Chlorophenyl)- 2-(5,6-Dimethoxybenzimidazol-1-Yl)-N-Methyl-1,3-Thiazole-4- Carboxamide, I.E. Smiles C1(=Nc(=C(S1)C1CCC(CC1)Cl)C(=O)Nc) N1C2C(N=C1)Cc(C(C2)Oc)Oc with IC50=0.0108616 Microm
    Other atoms: Ca (1); Na (1); Cl (3);
  10. 7g4l (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with N-[2-Amino-4-[3-[4- (Trifluoromethyl)Phenyl]Propanoyl]Phenyl]Acetamide, I.E. Smiles C1C(Ccc(C1N)Nc(=O)C)C(=O)CCC1CCC(CC1)C(F)(F)F with IC50=0.529423 Microm
    Other atoms: Ca (1); Na (1); Cl (1); F (3);
  11. 7g4m (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with N-Benzyl-2-(4- Methyl-5-Oxo-1H-1,2,4-Triazol-3-Yl)-N-Phenylacetamide
    Other atoms: Ca (1); Na (1); Cl (1); K (1);
  12. 7g4n (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with [4- (Trifluoromethoxy)Phenyl]Methyl (3AS,6AS)-2-(6-Sulfamoylpyridine-3- Carbonyl)-1,3,3A,4,6,6A-Hexahydropyrrolo[3,4-C]Pyrrole-5-Carboxylate, I.E. Smiles Fc(OC1CCC(CC1)Coc(=O)N1C[C@H]2[C@H](C1)Cn(C2)C(=O) C1CNC(CC1)S(=O)(=O)N)(F)F with IC50=0.0134798 Microm
    Other atoms: Cl (1); Na (2); Ca (1); F (3);
  13. 7g4o (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with [3-(2-Hydroxy-4,6- Dimethylphenyl)-3-Methylbutyl] 2,2-Dimethylpropanoate, I.E. Smiles C1C(Cc(C(C1O)C(Ccoc(=O)C(C)(C)C)(C)C)C)C with IC50=1.13176 Microm
    Other atoms: Na (2); Ca (1);
  14. 7g4p (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with Rac-(E)-1-[Rac- (3AR,8AS)-2-(1H-Benzotriazole-5-Carbonyl)-1,3,3A,4,5,7,8,8A- Octahydropyrrolo[3,4-D]Azepin-6-Yl]-3-[4-(Trifluoromethoxy) Phenyl]Prop-2-En-1-One, I.E. Smiles N1(Cc[C@@H]2[C@H](CC1)Cn(C2) C(=O)C1CCC2C(C1)N=NN2)C(=O)/C=C/C1CCC(CC1)Oc(F)(F)F with IC50=0.00155284 Microm
    Other atoms: Ca (2); Cl (2); F (3);
  15. 7g4q (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (3-Chloro-5- Cyanophenyl)Methyl Rac-(3AR,6AS)-2-(1H-Benzotriazole-5-Carbonyl)-1,3, 3A,4,6,6A-Hexahydropyrrolo[3,4-C]Pyrrole-5-Carboxylate, I.E. Smiles C1N(C[C@@H]2[C@H]1CN(C2)C(=O)C1CCC2C(C1)N=NN2)C(=O)OCC1CC(Cc(C1)Cl) C#N with IC50=0.729656 Microm
    Other atoms: Ca (1); Na (2); Cl (2);
  16. 7g4r (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (3-Chloro-5- Methylsulfonylphenyl)Methyl Rac-(3AR,8AS)-2-(1H-Benzotriazole-5- Carbonyl)-1,3,3A,4,5,7,8,8A-Octahydropyrrolo[3,4-D]Azepine-6- Carboxylate, I.E. Smiles N1(Cc[C@@H]2[C@H](CC1)Cn(C2)C(=O) C1CCC2C(C1)N=NN2)C(=O)OCC1CC(Cc(C1)Cl)S(=O)(=O)C with IC50=0.00849941 Microm
    Other atoms: Na (1); Ca (1); Cl (4);
  17. 7g4s (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 3-(4-Chlorophenyl)- 5-Methyl-N-(Oxolan-2-Ylmethyl)Pyrazolo[1,5-A]Pyrimidin-7-Amine, I.E. Smiles C12=C(C=NN1C(=Cc(=N2)C)Nc[C@@H]1OCCC1)C1CCC(CC1)Cl with IC50=0.95455 Microm
    Other atoms: Na (2); Ca (1); Cl (2);
  18. 7g4t (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (6-Bromonaphthalen- 2-Yl)-[Rac-(1R,2R,6S,7S)-9-(1H-Benzotriazole-5-Carbonyl)-4,9- Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2)C(=O) C1CCC2C(C1)Ccc(C2)Br with IC50=0.127386 Microm
    Other atoms: Na (2); Ca (1); Cl (1); Br (1);
  19. 7g4u (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (E)-1-[(3AS,8AR)-2- [(5R)-4,5,6,7-Tetrahydro-1H-Benzotriazole-5-Carbonyl]-1,3,3A,4,5,7,8, 8A-Octahydropyrrolo[3,4-D]Azepin-6-Yl]-3-[4-(Trifluoromethoxy) Phenyl]Prop-2-En-1-One, I.E. Smiles C1C[C@@H]2[C@H](CCN1C(=O) /C=C/C1CCC(CC1)Oc(F)(F)F)Cn(C2)C(=O)[C@@H]1CCC2=C(C1)N=NN2 with IC50=0.0213266 Microm
    Other atoms: F (3); Ca (1); Na (1);
  20. 7g4v (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with N-(4-Imidazol-1- Ylbutyl)-N-[[6-(4-Propan-2-Ylanilino)Pyridin-3-Yl]Methyl]Acetamide, I.E. Smiles C1(Cn(CCCCN2C=Cn=C2)C(=O)C)Ccc(NC1)NC1CCC(CC1)C(C)C with IC50=0.0468706 Microm
    Other atoms: Ca (1); Cl (1); K (1);
  21. 7g4w (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (6-Chloro-9H- Carbazol-2-Yl)-[(1R,2S,6R,7S)-4,9-Diazatricyclo[5.3.0.0-2,6]Decan-4- Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1) C(=O)C1CCC2C(C1)N=NN2)C(=O)C1CCC2-C3C(NC2C1)Ccc(C3)Cl with IC50=0.26635 Microm
    Other atoms: Cl (2); K (1); Ca (1); Na (3);
  22. 7g4x (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with N'-(4-Butylphenyl)- N-[2-[4-(4-Methylphenyl)Sulfonylpiperazin-1-Yl]Ethyl]Oxamide, I.E. Smiles S(=O)(=O)(N1CCN(CC1)Ccnc(=O)C(=O)NC1CCC(CC1)Cccc)C1CCC(CC1)C with IC50=0.0469096 Microm
    Other atoms: Na (2); Ca (1); K (1); Cl (1);
  23. 7g4y (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[4-Propan-2-Yloxy-7-(Trifluoromethyl) Quinoline-2-Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4- Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1) C(=O)C1CCC2C(C1)N=NN2)C(=O)C1NC2C(C(C1)Oc(C)C)Ccc(C2)C(F)(F)F with IC50=0.0197138 Microm
    Other atoms: F (3); Ca (2); Na (1); Cl (1); K (1);
  24. 7g50 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 3-[[2- Methylsulfanyl-5-(2,4,6-Trichlorobenzoyl)Phenyl]Methyl]-1H-Pyridazin- 6-One, I.E. Smiles C1(C(Ccc(C1)C(=O)C1C(Cc(CC1CL)Cl)Cl)Sc) CC1=Nnc(=O)C=C1 with IC50=1.03291 Microm
    Other atoms: Ca (1); K (1); Cl (4);
  25. 7g51 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with (5Z)-5-[(4- Phenoxyphenyl)Methylidene]-2-Pyrrolidin-1-Yl-1,3-Thiazol-4-One, I.E. Smiles C\1(=C\C2CCC(OC3CCCCC3)CC2)/C(=O)N=C(S1)N1CCCC1 with IC50=0.135695 Microm
    Other atoms: Ca (1); Na (1); Cl (1); K (1);
  26. 7g52 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 3-[(4-Chloro-5- Methyl-2-Propan-2-Ylphenoxy)Methyl]-1H-Pyridazin-6-One, I.E. Smiles O(CC1=Nnc(=O)C=C1)C1C(Cc(C(C1)C)Cl)C(C)C with IC50=0.043937 Microm
    Other atoms: Ca (2); Na (2); Cl (1);
  27. 7g53 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2S,6R,7S)-9-[4-(2-Methoxyethoxy)Quinoline-2-Carbonyl]-4, 9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2)C(=O) C1NC2C(C(C1)Occoc)CCCC2 with IC50=0.223388 Microm
    Other atoms: K (1); Cl (1); Na (1); Ca (1);
  28. 7g54 (Zn: 2) - Crystal Structure of Rat Autotaxin in Complex with Tert-Butyl (4AR)-9- (4-Chloro-2-Fluorophenyl)-5,11-Dioxo-2,4,4A,6-Tetrahydro-1H- Pyrazino[2,1-C][1,4]Benzodiazepine-3-Carboxylate, I.E. Smiles C1CC(Cc(C1C1CC2C(CC1)Nc(=O)[C@@H]1N(C2=O)Ccn(C1)C(=O)Oc(C)(C)C)F)Cl with IC50=0.506839 Microm
    Other atoms: Cl (2); Ca (1); F (1);
  29. 7g55 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with [3-Chloro-5- (Trifluoromethoxy)Phenyl]Methyl Rac-(3AR,6AS)-2-(1H-Benzotriazole-5- Carbonyl)-1,3,3A,4,6,6A-Hexahydropyrrolo[3,4-C]Pyrrole-5-Carboxylate, I.E. Smiles C1N(C[C@@H]2[C@H]1CN(C2)C(=O)C1CCC2C(C1)N=NN2)C(=O) OCC1CC(Cc(C1)Cl)Oc(F)(F)F with IC50=0.00942633 Microm
    Other atoms: Cl (1); Ca (1); Na (1); F (3);
  30. 7g56 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with A Dimer of [(2R,4S, 5S)-5-Ethynyl-1-Azabicyclo[2.2.2]Octan-2-Yl]Methyl N- Cyclohexylcarbamate, I.E. Smiles O=C(NC1CCCCC1) Oc[C@H]2C[C@@H]3CCN2C[C@@H]3C#Cc#C[C@H]4CN5CC[C@H]4C[C@@H]5COC(=O) NC6CCCCC6 with IC50=4.47875 Microm
    Other atoms: Na (2); Ca (1);
  31. 7g57 (Zn: 2) - Crystal Structure of Rat Autotaxin in Complex with (3,5- Dichlorophenyl)Methyl Rac-(3AR,6AS)-5-(1H-Triazol-5- Ylmethylcarbamoyl)-3,3A,4,5,6,6A-Hexahydro-1H-Cyclopenta[C]Pyrrole-2- Carboxylate, I.E. Smiles [C@H]12CN(C[C@H]1C[C@@H](C2)C(=O) NCC1=Cn=NN1)C(=O)OCC1CC(Cc(C1)Cl)Cl with IC50=0.326297 Microm
    Other atoms: Cl (4); Ca (1);
  32. 7g58 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 2-[(3,3-Dimethyl-6- Propan-2-Yl-1,2-Dihydroinden-5-Yl)Oxy]-1-[Rac-(3AR,8AS)-2-(1H- Benzotriazole-5-Carbonyl)-1,3,3A,4,5,7,8,8A-Octahydropyrrolo[3,4- D]Azepin-6-Yl]Ethanone, I.E. Smiles N1(Cc[C@@H]2[C@H](CC1)Cn(C2) C(=O)C1CC2C(CC1)Nn=N2)C(=O)COC1C(CC2C(C1)C(CC2)(C)C)C(C)C with IC50=0.00121852 Microm
    Other atoms: Cl (1); Na (1); Ca (2);
  33. 7g59 (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with [2-Fluoro-4-(2,2,2- Trifluoroethoxy)Phenyl]Methyl 2-(4,5,6,7-Tetrahydro-1H-Benzotriazole- 5-Carbonyl)-2,7-Diazaspiro[3.5]Nonane-7-Carboxylate, I.E. Smiles C1N(CC21CCN(CC2)C(=O)OCC1C(Cc(CC1)Occ(F)(F)F)F)C(=O)[C@H]1CCC2=C(C1) N=NN2 with IC50=0.211229 Microm
    Other atoms: F (16); Na (2); Ca (2); Cl (1);
  34. 7g5a (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 2-Tert-Butyl-6-(4- Chlorophenyl)-4-Methylsulfonylpyridine, I.E. Smiles C1(C2CCC(CC2)Cl) Cc(Cc(N1)C(C)(C)C)S(=O)(=O)C with IC50=2.51866 Microm
    Other atoms: Cl (2); Ca (1); Na (2);
  35. 7g5b (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with N-[5-[2-(4- Fluorophenyl)Ethynyl]Pyridin-2-Yl]Acetamide, I.E. Smiles C(#CC1CCC(F)CC1)C1CNC(Nc(=O)C)CC1 with IC50=1.56678 Microm
    Other atoms: Na (2); Ca (1); F (1);
  36. 7g5c (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 1-[(3AS,6AS)-5-(1H- Benzotriazole-5-Carbonyl)-1,3,3A,4,6,6A-Hexahydropyrrolo[3,4- C]Pyrrol-2-Yl]-2-[4-(Trifluoromethoxy)Phenoxy]Ethanone, I.E. Smiles C1N(C[C@H]2[C@H]1CN(C2)C(=O)C1CCC2C(C1)N=NN2)C(=O)COC1CCC(CC1)Oc(F) (F)F with IC50=0.137048 Microm
    Other atoms: Cl (1); K (1); Ca (1); Na (1); F (6);
  37. 7g5d (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with [(3AR,6AR)-5-(1H- Benzotriazole-5-Carbonyl)-1,3,3A,4,6,6A-Hexahydropyrrolo[3,4- C]Pyrrol-2-Yl]-[4-(4-Chlorophenyl)Phenyl]Methanone, I.E. Smiles N1(C[C@@H]2[C@@H](C1)Cn(C2)C(=O)C1CCC(CC1)C1CCC(CC1)Cl)C(=O) C1CCC2C(C1)N=NN2 with IC50=0.00428865 Microm
    Other atoms: Ca (1); Na (2); Cl (1);
  38. 7g5e (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with Rac-(4S,6R,7S,8S, 11S,12S,15R,16R)-4,6-Dihydroxy-12,16-Dimethyl-15-[Rac-(2R)-6-Methyl- 5-Methylidene-4-Oxoheptan-2-Yl]Pentacyclo[9.7.0.01,3.03,8.012, 16]Octadecane-7-Carboxylic Acid, I.E. Smiles [C@@]123[C@@]4(C1) [C@H]([C@]1([C@](CC4)([C@H](CC1)[C@@H](Cc(=O)C(=C)C(C)C)C)C)C) Cc[C@H]2[C@@H]([C@@H](C[C@@H]3O)O)C(=O)O with IC50=0.0603796 Microm
    Other atoms: Ca (1); Na (2);
  39. 7g5f (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 1H-Benzotriazol-5- Yl-[Rac-(1R,2R,6S,7S)-9-[4-(Cyclopropylmethoxy)Naphthalene-2- Carbonyl]-4,9-Diazatricyclo[5.3.0.02,6]Decan-4-Yl]Methanone, I.E. Smiles N1(C[C@H]2[C@@H](C1)[C@H]1[C@@H]2CN(C1)C(=O)C1CCC2C(C1)N=NN2) C(=O)C1CC(C2C(C1)CCCC2)OCC1CC1 with IC50=0.00985223 Microm
    Other atoms: Cl (1); Ca (1); Na (2);
  40. 7g5g (Zn: 1) - Crystal Structure of Rat Autotaxin in Complex with 1-[2- (Cyclohexylmethyl)-1,3-Dioxoisoindol-4-Yl]-N-[(4-Methyl-1,2,5- Oxadiazol-3-Yl)Methyl]Piperidine-4-Carboxamide, I.E. Smiles N1(C(=O) C2C(C1=O)CCCC2N1CCC(C(=O)NCC2=Non=C2C)CC1)CC1CCCCC1 with IC50=0.0435744 Microm
    Other atoms: Na (1); Ca (1);
Page generated: Mon Dec 15 11:41:20 2025

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