Zinc in PDB, part 277 (files: 11041-11080),
PDB 5fyi-5g0h
Experimental structures of coordination spheres of Zinc (Zn) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Zinc atoms. PDB files: 11041-11080 (PDB 5fyi-5g0h).
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5fyi (Zn: 2) - Crystal Structure of Human JMJD2A in Complex with Pyruvate
Other atoms:
Ni (2);
-
5fym (Zn: 2) - Crystal Structure of Jmjc Domain of Human Histone Demethylase Uty in Complex with D-2-Hydroxyglutarate
Other atoms:
Mn (2);
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5fyq (Zn: 2) - SIRT2 in Complex with A 13-Mer Trifluoroacetylated Ran Peptide
Other atoms:
F (6);
-
5fys (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate
Other atoms:
Mn (2);
Cl (1);
-
5fyt (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment (5-Fluoro-2-Oxo-2,3-Dihydro-1H-Indol-3-Yl)Acetic Acid (N09996A)
Other atoms:
F (1);
Mn (1);
Cl (1);
-
5fyu (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 3-Amino-4-Methyl-1,3-Dihydro-2H-Indol-2-One (N10042A)
Other atoms:
Mn (2);
Cl (1);
-
5fyv (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Oxaloacetate
Other atoms:
Mn (1);
Cl (1);
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5fyw (Zn: 10) - Transcription Initiation Complex Structures Elucidate Dna Opening (Oc)
Other atoms:
Mg (1);
-
5fyy (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 3-Pyridin-3-Ylaniline (N05798A) (Ligand Modelled Based on Pandda Event Map)
Other atoms:
Mn (1);
Cl (1);
-
5fyz (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 2-(2-Oxo-2,3-Dihydro-1H-Indol-3-Yl)Acetonitrile (N10063A)
Other atoms:
Mn (1);
Na (1);
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5fz0 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 2,5-Dichloro-N-(Pyridin-3-Yl)Thiophene-3-Carboxamide (N08137B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (3);
-
5fz1 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 2,4-Dichloro-N-Pyridin-3-Ylbenzamide (E48115B) (Ligand Modelled Based on Pandda Event Map)
Other atoms:
Mn (1);
Cl (2);
-
5fz3 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 3,6-Dihydroxybenzonorbornane (N08776B) (Ligand Modelled Based on Pandda Event Map)
Other atoms:
Mn (1);
Cl (1);
-
5fz4 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment (3R)-1-[(3-Phenyl-1,2,4-Oxadiazol-5-Yl) Methyl]Pyrrolidin-3-Ol (N10057A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fz5 (Zn: 10) - Transcription Initiation Complex Structures Elucidate Dna Opening (Cc)
Other atoms:
Mg (1);
-
5fz6 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment N05859B (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fz7 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment Ethyl 2-Amino-4-Thiophen-2-Ylthiophene-3- Carboxylate (N06131B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fz8 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Malate
Other atoms:
Mn (1);
Cl (1);
-
5fz9 (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment Thieno(3,2-B)Thiophene-5-Carboxylic Acid (N06263B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fza (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 2-Piperidin-4-Yloxy-5-(Trifluoromethyl)Pyridine (N10072A) (Ligand Modelled Based on Pandda Event Map)
Other atoms:
F (3);
Mn (1);
Cl (1);
-
5fzb (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 4-Pyridylthiourea (N06275B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fzc (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 4,5-Dihydronaphtho(1,2-B)Thiophene-2- Carboxylicacid (N11181A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fzd (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate
Other atoms:
Mn (1);
Cl (1);
-
5fze (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3960
Other atoms:
Mn (2);
Cl (1);
-
5fzf (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3962
Other atoms:
Mn (1);
Cl (1);
-
5fzg (Zn: 2) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3948
Other atoms:
Mn (1);
Cl (1);
-
5fzh (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with Maybridge Fragment 4,5-Dihydronaphtho(1,2-B)Thiophene-2- Carboxylicacid (N11181A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
F (1);
Mn (2);
Cl (1);
-
5fzi (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with MC3095
Other atoms:
Mn (2);
Cl (1);
-
5fzk (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment N,3-Dimethyl-N-(Pyridin-3-Ylmethyl)-1,2-Oxazole-5- Carboxamide (N10051A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fzl (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 3-Methyl-N-Pyridin-4-Yl-1,2-Oxazole-5-Carboxamide (N09954A) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
Mn (1);
Cl (1);
-
5fzm (Zn: 1) - Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with 3D Fragment 5-(2-Fluorophenyl)-1,3-Oxazole-4-Carboxylic Acid (N09989B) (Ligand Modelled Based on Pandda Event Map, Sgc - Diamond I04-1 Fragment Screening)
Other atoms:
F (1);
Mn (1);
Cl (1);
-
5g01 (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
Other atoms:
Br (2);
Na (1);
-
5g03 (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
Other atoms:
Br (1);
-
5g04 (Zn: 3) - Structure of the Human Apc-CDC20-HSL1 Complex
-
5g05 (Zn: 3) - Cryo-Em Structure of Combined Apo Phosphorylated Apc
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5g0b (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
Other atoms:
Cl (1);
-
5g0c (Zn: 1) - An Unusual Natural Product Primary Sulfonamide: Synthesis, Carbonic Anhydrase Inhibition and Protein X-Ray Structure of Psammaplin C
Other atoms:
Na (3);
-
5g0f (Zn: 3) - Crystal Structure of Danio Rerio HDAC6 Znf-Ubp Domain
Other atoms:
Ni (2);
-
5g0g (Zn: 1) - Crystal Structure of Danio Rerio HDAC6 CD1 in Complex with Trichostatin A
Other atoms:
Cl (5);
Na (2);
-
5g0h (Zn: 1) - Crystal Structure of Danio Rerio HDAC6 CD2 in Complex with ( S)-Trichostatin A
Other atoms:
K (2);
Page generated: Mon Dec 15 11:34:45 2025
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