Zinc in PDB 8yf2: Cryo-Em Structure of Sars-Cov-2 Prototype Rbd in Complex with Raccoon Dog ACE2 (Local Refinement)

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Prototype Rbd in Complex with Raccoon Dog ACE2 (Local Refinement) (pdb code 8yf2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Prototype Rbd in Complex with Raccoon Dog ACE2 (Local Refinement), PDB code: 8yf2:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Prototype Rbd in Complex with Raccoon Dog ACE2 (Local Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Prototype Rbd in Complex with Raccoon Dog ACE2 (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:79.3 occ:1.00 NE2 A:HIS374 2.3 37.9 1.0 NE2 A:HIS378 2.3 46.5 1.0 OE1 A:GLU402 2.5 57.3 1.0 OE2 A:GLU402 2.6 58.7 1.0 CD A:GLU402 2.9 57.4 1.0 CD2 A:HIS374 2.9 38.0 1.0 CD2 A:HIS378 3.1 44.6 1.0 CE1 A:HIS378 3.3 44.2 1.0 CE1 A:HIS374 3.4 48.3 1.0 CG A:HIS374 4.2 39.8 1.0 CG A:HIS378 4.3 38.3 1.0 ND1 A:HIS378 4.3 38.5 1.0 ND1 A:HIS374 4.4 49.5 1.0 CG A:GLU402 4.4 51.6 1.0 OE2 A:GLU375 4.6 53.0 1.0

C.L.Luo, L.J.Li, G.F.Gao. Structural Basis and Analysis of Raccoon Dog ACE2 Binding to Different Sars-Cov-2 Spike Rbds To Be Published.