Zinc in PDB 8y6a: Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab

All present enzymatic activity of Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab:
3.4.17.23;

The binding sites of Zinc atom in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab (pdb code 8y6a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab, PDB code: 8y6a:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Sars-Cov-2 Omicron Ba.2.86 Rbd in Complex with Human ACE2 and S309 Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn802 b:121.8 occ:1.00 OE1 A:GLU402 2.2 103.1 1.0 NE2 A:HIS378 2.3 101.1 1.0 NE2 A:HIS374 2.3 97.7 1.0 OE2 A:GLU402 2.6 104.0 1.0 CD A:GLU402 2.6 102.5 1.0 CE1 A:HIS378 3.1 101.2 1.0 CE1 A:HIS374 3.2 97.2 1.0 CD2 A:HIS378 3.2 102.2 1.0 CD2 A:HIS374 3.3 100.5 1.0 CG A:GLU402 4.0 99.2 1.0 ND1 A:HIS378 4.2 101.9 1.0 CG A:HIS378 4.3 102.2 1.0 ND1 A:HIS374 4.4 98.4 1.0 OE2 A:GLU375 4.4 108.2 1.0 CB A:GLU402 4.5 99.3 1.0 CG A:HIS374 4.5 98.9 1.0 CA A:GLU402 4.7 98.8 1.0

L.J.Li, G.F.Gao. Spike Structures, Receptor Binding and Immune Escape of Sars-Cov-2 Omicron Recently-Circulating Ba.2.86.1, Jn.1, Eg.5, Eg.5.1 and Hv.1 Sub-Variants To Be Published.