Zinc in PDB 8whz: Ba.2.86 Rbd in Complex with HACE2 (Local Refinement)

The structure of Ba.2.86 Rbd in Complex with HACE2 (Local Refinement) also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Ba.2.86 Rbd in Complex with HACE2 (Local Refinement) (pdb code 8whz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Ba.2.86 Rbd in Complex with HACE2 (Local Refinement), PDB code: 8whz:

Zinc binding site 1 out of 1 in the Ba.2.86 Rbd in Complex with HACE2 (Local Refinement)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ba.2.86 Rbd in Complex with HACE2 (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:149.5 occ:1.00 NE2 A:HIS374 2.3 93.7 1.0 NE2 A:HIS378 2.3 94.5 1.0 OE2 A:GLU402 2.4 105.6 1.0 OE1 A:GLU402 2.6 105.6 1.0 CD2 A:HIS374 2.7 93.7 1.0 CD2 A:HIS378 2.7 94.5 1.0 CD A:GLU402 2.8 105.6 1.0 CE1 A:HIS374 3.5 93.7 1.0 CE1 A:HIS378 3.6 94.5 1.0 OE2 A:GLU375 3.6 97.1 1.0 CG A:HIS374 3.9 93.7 1.0 CG A:HIS378 4.1 94.5 1.0 CG A:GLU402 4.2 105.6 1.0 ND1 A:HIS374 4.3 93.7 1.0 ND1 A:HIS378 4.4 94.5 1.0 CD A:GLU375 4.5 97.1 1.0 OE1 A:GLU375 4.7 97.1 1.0 CA A:GLU402 4.9 105.6 1.0 CB A:GLU402 5.0 105.6 1.0

P.Liu, C.Yue, B.Meng, T.Xiao, S.Yang, S.Liu, F.Jian, Q.Zhu, Y.Yu, Y.Ren, P.Wang, Y.Li, J.Wang, X.Mao, F.Shao, Y.Wang, R.K.Gupta, Y.Cao, X.Wang. Spike N354 Glycosylation Augments Sars-Cov-2 Fitness For Human Adaptation Through Structural Plasticity Natl Sci Rev 2024.
ISSN: ESSN 2053-714X
DOI: 10.1093/NSR/NWAE206