Zinc in PDB 8whs: Spike Trimer of Ba.2.86 in Complex with One HACE2

The structure of Spike Trimer of Ba.2.86 in Complex with One HACE2 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Spike Trimer of Ba.2.86 in Complex with One HACE2 (pdb code 8whs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Spike Trimer of Ba.2.86 in Complex with One HACE2, PDB code: 8whs:

Zinc binding site 1 out of 1 in the Spike Trimer of Ba.2.86 in Complex with One HACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Spike Trimer of Ba.2.86 in Complex with One HACE2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn901 b:162.8 occ:1.00 CD2 D:HIS378 2.1 123.0 1.0 CD2 D:HIS374 2.2 126.2 1.0 NE2 D:HIS374 2.3 125.8 1.0 NE2 D:HIS378 2.3 122.0 1.0 OE2 D:GLU402 2.9 124.4 1.0 OE2 D:GLU375 3.0 125.7 1.0 CD D:GLU402 3.4 123.8 1.0 CG D:HIS378 3.4 124.4 1.0 OE1 D:GLU402 3.4 124.1 1.0 CG D:HIS374 3.5 125.2 1.0 CE1 D:HIS374 3.6 124.5 1.0 CE1 D:HIS378 3.6 122.3 1.0 CD D:GLU375 3.9 125.1 1.0 ND1 D:HIS378 4.1 123.6 1.0 ND1 D:HIS374 4.1 125.4 1.0 OE1 D:GLU375 4.2 124.3 1.0 O D:HIS374 4.3 122.3 1.0 CB D:HIS378 4.5 124.3 1.0 C D:HIS374 4.6 123.4 1.0 CB D:HIS374 4.6 122.5 1.0 CG D:GLU402 4.7 122.2 1.0 CA D:GLU375 4.8 124.8 1.0 N D:GLU375 4.8 123.8 1.0 CG D:GLU375 5.0 123.8 1.0

P.Liu, C.Yue, B.Meng, T.Xiao, S.Yang, S.Liu, F.Jian, Q.Zhu, Y.Yu, Y.Ren, P.Wang, Y.Li, J.Wang, X.Mao, F.Shao, Y.Wang, R.K.Gupta, Y.Cao, X.Wang. Spike N354 Glycosylation Augments Sars-Cov-2 Fitness For Human Adaptation Through Structural Plasticity Natl Sci Rev 2024.
ISSN: ESSN 2053-714X
DOI: 10.1093/NSR/NWAE206