Zinc in PDB 8uco: Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine

Other elements in 8uco:

The structure of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine also contains other interesting chemical elements:

Copper (Cu) 3 atoms
Iron (Fe) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine (pdb code 8uco). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine, PDB code: 8uco:

Zinc binding site 1 out of 1 in 8uco

Go back to Zinc Binding Sites List in 8uco
Zinc binding site 1 out of 1 in the Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamine within 5.0Å range:
probe atom residue distance (Å) B Occ
d:Zn201

b:60.2
occ:1.00
ND1 d:HIS133 2.1 49.5 1.0
SG d:CYS148 2.3 45.8 1.0
SG d:CYS151 2.3 48.4 1.0
SG d:CYS125 2.3 48.9 1.0
CE1 d:HIS133 2.6 49.5 1.0
CG d:HIS133 3.4 49.5 1.0
CB d:CYS125 3.5 48.9 1.0
CB d:CYS151 3.7 48.4 1.0
CB d:CYS148 3.7 45.8 1.0
NE2 d:HIS133 3.8 49.5 1.0
CB d:HIS133 4.1 49.5 1.0
N d:CYS151 4.2 48.4 1.0
CD2 d:HIS133 4.2 49.5 1.0
OG d:SER153 4.3 46.6 1.0
C d:CYS125 4.4 48.9 1.0
N d:GLY127 4.4 49.3 1.0
CA d:CYS151 4.5 48.4 1.0
N d:THR126 4.6 48.4 1.0
CA d:CYS125 4.6 48.9 1.0
O d:CYS125 4.6 48.9 1.0
CA d:GLY127 4.7 49.3 1.0
N d:GLY152 4.9 46.5 1.0
C d:THR126 4.9 48.4 1.0
CA d:CYS148 5.0 45.8 1.0
O d:CYS148 5.0 45.8 1.0

Reference:

J.Ye, B.Liu, W.Li. Cryoem Structure of Komagataella Pastoris Cytochrome C Oxidase (9 Subunits) in Complex with Human VMAT2 and Amphetamin To Be Published.
Page generated: Thu Oct 31 12:07:01 2024

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