Zinc in PDB 8tru: Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85

The structure of Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85, PDB code: 8tru was solved by R.J.Gruninger, D.R.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.94 / 1.90
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.28, 57.28, 222.16, 90, 90, 90
R / Rfree (%)	20.7 / 25.6

The binding sites of Zinc atom in the Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85 (pdb code 8tru). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85, PDB code: 8tru:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:31.8 occ:0.32 O A:GLY488 2.0 59.4 1.0 OD1 A:ASP491 2.1 65.5 1.0 OE2 A:GLU492 2.1 66.1 1.0 OD2 A:ASP491 2.4 64.1 1.0 CG A:ASP491 2.5 63.0 1.0 O A:HOH778 2.6 38.2 1.0 CD A:GLU492 3.1 63.2 1.0 C A:GLY488 3.2 52.4 1.0 OE1 A:GLU492 3.4 66.3 1.0 CA A:GLN489 3.8 41.0 1.0 N A:GLN489 3.9 46.3 1.0 CB A:ASP491 4.0 59.0 1.0 CA A:GLY488 4.3 51.8 1.0 N A:GLU492 4.3 49.2 1.0 C A:GLN489 4.4 39.3 1.0 CG A:GLU492 4.4 56.0 1.0 N A:ASP491 4.5 49.0 1.0 O A:HOH763 4.5 38.4 1.0 CA A:ASP491 4.7 52.8 1.0 N A:PHE490 4.9 42.0 1.0 CB A:GLU492 4.9 51.2 1.0 NZ A:LYS510 4.9 40.4 1.0 C A:ASP491 4.9 50.0 1.0 CG A:GLN489 4.9 39.0 1.0 O A:GLN489 5.0 35.8 1.0 CB A:GLN489 5.0 38.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A CE15 From Fibrobacter Succinogenes Subsp. Succinogenes S85 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:30.4 occ:0.71 O A:HOH718 1.9 30.4 1.0 OE2 A:GLU360 2.0 51.8 1.0 ND1 A:HIS159 2.1 53.0 1.0 O A:HOH864 2.2 37.1 1.0 OE1 A:GLU360 2.5 51.0 1.0 CD A:GLU360 2.6 48.5 1.0 CE1 A:HIS159 2.8 52.5 1.0 CG A:HIS159 3.2 50.7 1.0 CB A:HIS159 3.7 46.8 1.0 CG A:LYS196 3.9 44.0 1.0 NE2 A:HIS159 4.0 53.0 1.0 CG A:GLU360 4.1 43.2 1.0 OE2 A:GLU200 4.1 31.7 1.0 N A:HIS159 4.1 41.4 1.0 NE A:ARG199 4.2 38.5 1.0 CD2 A:HIS159 4.2 52.5 1.0 O A:LYS196 4.4 37.1 1.0 NH2 A:ARG199 4.5 39.2 1.0 O A:HOH936 4.5 45.9 1.0 CA A:HIS159 4.6 43.0 1.0 CA A:LYS196 4.7 37.3 1.0 C A:ASP158 4.8 38.9 1.0 CZ A:ARG199 4.8 38.2 1.0 CB A:LYS196 4.8 40.5 1.0 CD A:LYS196 5.0 46.3 1.0 CA A:ASP158 5.0 37.0 1.0

R.J.Gruninger, M.Kevorkova, K.E.Low, D.R.Jones, L.Worrall, T.A.Mcallister, D.W.Abbott. Structural, Biochemical, and Phylogenetic Analysis of Bacterial and Fungal Carbohydrate Esterase Family 15 Glucuronoyl Esterases in the Rumen. Protein J. 2024.
ISSN: ISSN 1572-3887
PubMed: 39153129
DOI: 10.1007/S10930-024-10221-0